Gm56890 Gene Detail

Summary

• Symbol
  Gm56890
• Name
  predicted gene, 56890

• Feature Type
  lncRNA gene
• IDs
  MGI:7337693
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr17:22931596-23036824 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  2578 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337693	lncRNA gene	Chr17:22931596-23036824 (-)
129S1/SvImJ	ENSMUSG00200038720	lncRNA gene	Chr17:18503126-18505259 (-)
A/J	ENSMUSG00195038224	lncRNA gene	Chr17:19513809-19515942 (-)
AKR/J	ENSMUSG00220026602	lncRNA gene	Chr17:18521654-18523787 (-)
BALB/cJ	ENSMUSG00180017929	lncRNA gene	Chr17:18803915-18806048 (-)
C3H/HeJ	ENSMUSG00175041916	lncRNA gene	Chr17:18462445-18464579 (-)
C57BL/6NJ	ENSMUSG00215043485	lncRNA gene	Chr17:18449517-18451651 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005023502	lncRNA gene	Chr17:19134703-19136839 (-)
CBA/J	ENSMUSG00210040567	lncRNA gene	Chr17:18229408-18231542 (-)
DBA/2J	ENSMUSG00185054792	lncRNA gene	Chr17:20610197-20612330 (-)
FVB/NJ	ENSMUSG00205037404	lncRNA gene	Chr17:18942750-18944884 (-)
JF1/MsJ	ENSUMUG00000037664	lncRNA gene	Chr17:20046898-20049023 (-)
LP/J	ENSMUSG00230055132	lncRNA gene	Chr17:22008110-22010243 (-)
NOD/ShiLtJ	ENSMUSG00190038125	lncRNA gene	Chr17:18439696-18441830 (-)
NZO/HlLtJ	ENSMUSG00225054805	lncRNA gene	Chr17:23931178-23933311 (-)
PWK/PhJ	ENSLUMG00010020623	lncRNA gene	Chr17:18032814-18034950 (-)
SPRET/EiJ	ENSMSPG00010040795	lncRNA gene	Chr17:19412038-19414163 (-)
WSB/EiJ	ENSIUOG00005040364	lncRNA gene	Chr17:19235534-19237667 (-)

Homology

• Gene Tree
  Gm56890
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  18 phenotype references
  

• All Mutations and Alleles
  2
• Gene trapped
  1
• Spontaneous
  1
• Genomic Mutations
  1 involving Gm56890
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  79

• Ensembl
  ENSMUSG00000120597 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120597	Ensembl Gene Model | MGI Sequence Detail	105229	C57BL/6J
transcript	ENSMUST00000244455	Ensembl | MGI Sequence Detail	2270	Not Applicable

References

• Summaries
  All 19

  Phenotypes 18
• Earliest
  J:84774 Dunn LC, Studies of the genetic variability in populations of wild house mice. II. Analysis of eight additional alleles at locus T. Genetics. 1957;42:299-311
• Latest
  J:273736 Charron Y, et al., Two isoforms of the RAC-specific guanine nucleotide exchange factor TIAM2 act oppositely on transmission ratio distortion by the mouse t-haplotype. PLoS Genet. 2019 Feb;15(2):e1007964

TSS for Gm56890:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr146606	Chr17:22958865-22958910 (-)	77,936 bp