Gm56889 Gene Detail

Summary

• Symbol
  Gm56889
• Name
  predicted gene, 56889

• Feature Type
  lncRNA gene
• IDs
  MGI:7337691
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr17:5537814-5542840 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  215 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337691	lncRNA gene	Chr17:5537814-5542840 (-)
129S1/SvImJ	ENSMUSG00200035169	lncRNA gene	Chr17:2436043-2438086 (-)
A/J	ENSMUSG00195023762	lncRNA gene	Chr17:2430449-2432492 (-)
AKR/J	ENSMUSG00220028181	lncRNA gene	Chr17:2625900-2627943 (-)
BALB/cJ	ENSMUSG00180028875	lncRNA gene	Chr17:2442241-2444284 (-)
C3H/HeJ	ENSMUSG00175035274	lncRNA gene	Chr17:2402239-2404282 (-)
C57BL/6NJ	ENSMUSG00215032659	lncRNA gene	Chr17:2423097-2425140 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005023131	lncRNA gene	Chr17:2463616-2465661 (-)
CBA/J	ENSMUSG00210041497	lncRNA gene	Chr17:2419206-2421249 (-)
DBA/2J	ENSMUSG00185023609	lncRNA gene	Chr17:2522423-2524466 (-)
FVB/NJ	ENSMUSG00205009762	lncRNA gene	Chr17:2476292-2478341 (-)
JF1/MsJ	ENSUMUG00000038513	lncRNA gene	Chr17:2503220-2505265 (-)
LP/J	ENSMUSG00230034748	lncRNA gene	Chr17:3619607-3621650 (-)
NOD/ShiLtJ	ENSMUSG00190039374	lncRNA gene	Chr17:2407918-2409963 (-)
NZO/HlLtJ	ENSMUSG00225029075	lncRNA gene	Chr17:5923610-5925653 (-)
PWK/PhJ	ENSLUMG00010020140	lncRNA gene	Chr17:2526778-2528823 (-)
SPRET/EiJ	ENSMSPG00010039752	lncRNA gene	Chr17:2456417-2458461 (-)
WSB/EiJ	ENSIUOG00005014256	lncRNA gene	Chr17:2470290-2472333 (-)

Homology

• Gene Tree
  Gm56889
  

Sequences &
Gene Models

• All Sequences
  22

• Ensembl
  ENSMUSG00000120361 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120361	Ensembl Gene Model | MGI Sequence Detail	5027	C57BL/6J
transcript	ENSMUST00000242789	Ensembl | MGI Sequence Detail	2044	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56889:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr146303	Chr17:5542772-5542792 (-)	58 bp
Tssr146302	Chr17:5542731-5542754 (-)	97 bp