Gm56887 Gene Detail

Summary

• Symbol
  Gm56887
• Name
  predicted gene, 56887

• Feature Type
  lncRNA gene
• IDs
  MGI:7337687
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr17:87059572-87060912 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  113 from dbSNP Build 142
• Strain Annotations
  16

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337687	lncRNA gene	Chr17:87059572-87060912 (-)
129S1/SvImJ	ENSMUSG00200023186	lncRNA gene	Chr17:82465220-82466270 (-)
A/J	ENSMUSG00195029545	lncRNA gene	Chr17:83844369-83845414 (-)
AKR/J	ENSMUSG00220016595	lncRNA gene	Chr17:82796130-82797183 (-)
BALB/cJ	ENSMUSG00180026249	lncRNA gene	Chr17:83516495-83517542 (-)
C3H/HeJ	ENSMUSG00175007200	lncRNA gene	Chr17:82782420-82783465 (-)
C57BL/6NJ	ENSMUSG00215023795	lncRNA gene	Chr17:82503389-82504438 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005011878	lncRNA gene	Chr17:83339098-83340155 (-)
CBA/J	ENSMUSG00210022300	lncRNA gene	Chr17:82641123-82642168 (-)
DBA/2J	ENSMUSG00185020576	lncRNA gene	Chr17:85460593-85461640 (-)
FVB/NJ	ENSMUSG00205006047	lncRNA gene	Chr17:83270234-83271287 (-)
JF1/MsJ	ENSUMUG00000016412	lncRNA gene	Chr17:85197811-85198855 (-)
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190010048	lncRNA gene	Chr17:82539212-82540258 (-)
NZO/HlLtJ	no annotation
PWK/PhJ	ENSLUMG00010032209	lncRNA gene	Chr17:82405659-82406704 (-)
SPRET/EiJ	ENSMSPG00010020494	lncRNA gene	Chr17:82996521-82997571 (-)
WSB/EiJ	ENSIUOG00005022719	lncRNA gene	Chr17:83462473-83463519 (-)

Homology

• Gene Tree
  Gm56887
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000120278 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120278	Ensembl Gene Model | MGI Sequence Detail	1341	C57BL/6J
transcript	ENSMUST00000242259	Ensembl | MGI Sequence Detail	1341	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56887:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr149741	Chr17:87060894-87060908 (-)	11 bp
Tssr149740	Chr17:87060846-87060879 (-)	49 bp