Gm56886 Gene Detail

Summary

• Symbol
  Gm56886
• Name
  predicted gene, 56886

• Feature Type
  lncRNA gene
• IDs
  MGI:7337685
• Alliance
  genome feature page
• Transcription Start Sites
  7 TSS

Location &
Maps

• Sequence Map
  Chr17:26727510-26728967 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  126 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337685	lncRNA gene	Chr17:26727510-26728967 (+)
129S1/SvImJ	ENSMUSG00200054152	lncRNA gene	Chr17:22171640-22172018 (+)
A/J	ENSMUSG00195054456	lncRNA gene	Chr17:23192253-23192631 (+)
AKR/J	ENSMUSG00220053476	lncRNA gene	Chr17:22235637-22236015 (+)
BALB/cJ	ENSMUSG00180050657	lncRNA gene	Chr17:22469720-22470098 (+)
C3H/HeJ	ENSMUSG00175053927	lncRNA gene	Chr17:22227888-22228266 (+)
C57BL/6NJ	ENSMUSG00215054258	lncRNA gene	Chr17:22237263-22237641 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005051672	lncRNA gene	Chr17:22831581-22831959 (+)
CBA/J	ENSMUSG00210051051	lncRNA gene	Chr17:22066751-22067129 (+)
DBA/2J	ENSMUSG00185054829	lncRNA gene	Chr17:24280432-24280810 (+)
FVB/NJ	ENSMUSG00205052827	lncRNA gene	Chr17:22539051-22539429 (+)
JF1/MsJ	ENSUMUG00000057669	lncRNA gene	Chr17:23734164-23734542 (+)
LP/J	ENSMUSG00230055066	lncRNA gene	Chr17:25676147-25676525 (+)
NOD/ShiLtJ	ENSMUSG00190054487	lncRNA gene	Chr17:22169274-22169652 (+)
NZO/HlLtJ	ENSMUSG00225054369	lncRNA gene	Chr17:27599512-27599890 (+)
PWK/PhJ	ENSLUMG00010053445	lncRNA gene	Chr17:21649778-21650156 (+)
SPRET/EiJ	ENSMSPG00010050100	lncRNA gene	Chr17:22973506-22973888 (+)
WSB/EiJ	ENSIUOG00005051921	lncRNA gene	Chr17:22926288-22926666 (+)

Homology

• Gene Tree
  Gm56886
  

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000120402 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120402	Ensembl Gene Model | MGI Sequence Detail	1458	C57BL/6J
transcript	ENSMUST00000243101	Ensembl | MGI Sequence Detail	1458	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56886:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr143231	Chr17:26726468-26726475 (+)	-1,038 bp
Tssr143232	Chr17:26727622-26727654 (+)	128 bp
Tssr143233	Chr17:26727671-26727705 (+)	178 bp
Tssr143234	Chr17:26727723-26727748 (+)	226 bp
Tssr5044	Chr17:26727925-26727938 (+)	422 bp
Tssr143235	Chr17:26728675-26728682 (+)	1,169 bp
Tssr143236	Chr17:26728700-26728715 (+)	1,198 bp