Gm56885 Gene Detail

Summary

• Symbol
  Gm56885
• Name
  predicted gene, 56885

• Feature Type
  lncRNA gene
• IDs
  MGI:7337683
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr17:33084605-33097485 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  720 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337683	lncRNA gene	Chr17:33084605-33097485 (+)
129S1/SvImJ	ENSMUSG00200054270	lncRNA gene	Chr17:28771655-28772418 (+)
A/J	ENSMUSG00195054652	lncRNA gene	Chr17:29710463-29711223 (+)
AKR/J	ENSMUSG00220053552	lncRNA gene	Chr17:28738533-28739293 (+)
BALB/cJ	ENSMUSG00180050079	lncRNA gene	Chr17:29045784-29046547 (+)
C3H/HeJ	ENSMUSG00175053954	lncRNA gene	Chr17:28619548-28620308 (+)
C57BL/6NJ	ENSMUSG00215054410	lncRNA gene	Chr17:28616757-28617520 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005051086	lncRNA gene	Chr17:29636670-29637426 (+)
CBA/J	ENSMUSG00210051124	lncRNA gene	Chr17:28446497-28447257 (+)
DBA/2J	ENSMUSG00185054328	lncRNA gene	Chr17:31057711-31058474 (+)
FVB/NJ	ENSMUSG00205053615	lncRNA gene	Chr17:28943126-28943889 (+)
JF1/MsJ	ENSUMUG00000057929	lncRNA gene	Chr17:30354863-30355613 (+)
LP/J	ENSMUSG00230054670	lncRNA gene	Chr17:32170109-32170872 (+)
NOD/ShiLtJ	ENSMUSG00190054264	lncRNA gene	Chr17:28557556-28558319 (+)
NZO/HlLtJ	ENSMUSG00225054923	lncRNA gene	Chr17:34207123-34207886 (+)
PWK/PhJ	ENSLUMG00010053416	lncRNA gene	Chr17:28199774-28200536 (+)
SPRET/EiJ	ENSMSPG00010050338	lncRNA gene	Chr17:29297352-29298110 (+)
WSB/EiJ	ENSIUOG00005051774	lncRNA gene	Chr17:29352181-29352944 (+)

Homology

• Gene Tree
  Gm56885
  

Sequences &
Gene Models

• All Sequences
  23

• Ensembl
  ENSMUSG00000120398 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120398	Ensembl Gene Model | MGI Sequence Detail	12881	C57BL/6J
transcript	ENSMUST00000293237	Ensembl | MGI Sequence Detail	1408	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;