Gm56884 Gene Detail

Summary

• Symbol
  Gm56884
• Name
  predicted gene, 56884

• Feature Type
  lncRNA gene
• IDs
  MGI:7337681
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr17:35438054-35439025 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337681	lncRNA gene	Chr17:35438054-35439025 (-)
129S1/SvImJ	ENSMUSG00200052214	lncRNA gene	Chr17:31142217-31142736 (-)
A/J	ENSMUSG00195046756	lncRNA gene	Chr17:32044314-32044833 (-)
AKR/J	ENSMUSG00220052567	lncRNA gene	Chr17:31072543-31073062 (-)
BALB/cJ	ENSMUSG00180043084	lncRNA gene	Chr17:31414162-31414681 (-)
C3H/HeJ	ENSMUSG00175041694	lncRNA gene	Chr17:30958653-30959172 (-)
C57BL/6NJ	ENSMUSG00215053980	lncRNA gene	Chr17:30982458-30982977 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005052403	lncRNA gene	Chr17:32001175-32001694 (-)
CBA/J	ENSMUSG00210052126	lncRNA gene	Chr17:30780745-30781264 (-)
DBA/2J	ENSMUSG00185054433	lncRNA gene	Chr17:33433382-33433901 (-)
FVB/NJ	ENSMUSG00205053554	lncRNA gene	Chr17:31301048-31301567 (-)
JF1/MsJ	ENSUMUG00000057208	lncRNA gene	Chr17:32685642-32686151 (-)
LP/J	ENSMUSG00230054691	lncRNA gene	Chr17:34540448-34540967 (-)
NOD/ShiLtJ	ENSMUSG00190053190	lncRNA gene	Chr17:30901023-30901542 (-)
NZO/HlLtJ	ENSMUSG00225055009	lncRNA gene	Chr17:36554110-36554629 (-)
PWK/PhJ	ENSLUMG00010043551	lncRNA gene	Chr17:30519192-30519711 (-)
SPRET/EiJ	ENSMSPG00010049921	lncRNA gene	Chr17:31703159-31703678 (-)
WSB/EiJ	ENSIUOG00005051534	lncRNA gene	Chr17:31629661-31630180 (-)

Homology

• Gene Tree
  Gm56884
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000120349 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120349	Ensembl Gene Model | MGI Sequence Detail	972	C57BL/6J
transcript	ENSMUST00000242704	Ensembl | MGI Sequence Detail	972	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56884:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr147821	Chr17:35438572-35438587 (-)	445 bp
Tssr147820	Chr17:35438562-35438569 (-)	459 bp