Gm56882 Gene Detail

Summary

• Symbol
  Gm56882
• Name
  predicted gene, 56882

• Feature Type
  lncRNA gene
• IDs
  MGI:7337677
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr17:45883445-45915325 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  894 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337677	lncRNA gene	Chr17:45883445-45915325 (+)
129S1/SvImJ	ENSMUSG00200028704	lncRNA gene	Chr17:41092969-41094302 (+)
A/J	ENSMUSG00195022939	lncRNA gene	Chr17:42590149-42591464 (+)
AKR/J	ENSMUSG00220037042	lncRNA gene	Chr17:41561553-41562884 (+)
BALB/cJ	ENSMUSG00180025684	lncRNA gene	Chr17:42328268-42329595 (+)
C3H/HeJ	ENSMUSG00175016415	lncRNA gene	Chr17:41642294-41643621 (+)
C57BL/6NJ	ENSMUSG00215036779	lncRNA gene	Chr17:41207200-41208533 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005025653	lncRNA gene	Chr17:42385386-42386714 (+)
CBA/J	ENSMUSG00210040408	lncRNA gene	Chr17:41392004-41393333 (+)
DBA/2J	ENSMUSG00185029901	lncRNA gene	Chr17:44309445-44310760 (+)
FVB/NJ	ENSMUSG00205053067	lncRNA gene	Chr17:41882769-41884118 (+)
JF1/MsJ	ENSUMUG00000040455	lncRNA gene	Chr17:43917183-43918537 (+)
LP/J	ENSMUSG00230041696	lncRNA gene	Chr17:45194925-45196258 (+)
NOD/ShiLtJ	ENSMUSG00190018923	lncRNA gene	Chr17:41281319-41282634 (+)
NZO/HlLtJ	ENSMUSG00225043855	lncRNA gene	Chr17:47459293-47460638 (+)
PWK/PhJ	ENSLUMG00010037375	lncRNA gene	Chr17:41154195-41155531 (+)
SPRET/EiJ	ENSMSPG00010039363	lncRNA gene	Chr17:41380771-41382101 (+)
WSB/EiJ	ENSIUOG00005028675	lncRNA gene	Chr17:42254029-42255346 (+)

Homology

• Gene Tree
  Gm56882
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  34
• Gene trapped
  34
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  28

• Ensembl
  ENSMUSG00000120274 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120274	Ensembl Gene Model | MGI Sequence Detail	31881	C57BL/6J
transcript	ENSMUST00000242222	Ensembl | MGI Sequence Detail	2355	Not Applicable

References

• Summaries
  All 2

  Phenotypes 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:141210 Mouse Genome Informatics (MGI) and National Center for Biotechnology Information (NCBI), Mouse Gene Trap Data Load from dbGSS. Database Download. 2008;

TSS for Gm56882:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr144804	Chr17:45881434-45881462 (+)	-1,997 bp
Tssr144805	Chr17:45881648-45881655 (+)	-1,793 bp