Gm56880 Gene Detail

Summary

• Symbol
  Gm56880
• Name
  predicted gene, 56880

• Feature Type
  lncRNA gene
• IDs
  MGI:7337673
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr17:81238709-81241257 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  250 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337673	lncRNA gene	Chr17:81238709-81241257 (-)
129S1/SvImJ	ENSMUSG00200025174	lncRNA gene	Chr17:76613257-76615536 (-)
A/J	ENSMUSG00195028388	lncRNA gene	Chr17:77979111-77981373 (-)
AKR/J	ENSMUSG00220014010	lncRNA gene	Chr17:76912449-76914711 (-)
BALB/cJ	ENSMUSG00180004991	lncRNA gene	Chr17:77680257-77682519 (-)
C3H/HeJ	ENSMUSG00175015945	lncRNA gene	Chr17:76951225-76953487 (-)
C57BL/6NJ	ENSMUSG00215015669	lncRNA gene	Chr17:76666930-76669192 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005015419	lncRNA gene	Chr17:77544917-77547198 (-)
CBA/J	ENSMUSG00210021090	lncRNA gene	Chr17:76812635-76814897 (-)
DBA/2J	ENSMUSG00185013007	lncRNA gene	Chr17:79646184-79648446 (-)
FVB/NJ	ENSMUSG00205030692	lncRNA gene	Chr17:77428368-77430630 (-)
JF1/MsJ	ENSUMUG00000025067	lncRNA gene	Chr17:79381655-79383935 (-)
LP/J	ENSMUSG00230022023	lncRNA gene	Chr17:80647624-80649886 (-)
NOD/ShiLtJ	ENSMUSG00190009825	lncRNA gene	Chr17:76712954-76715216 (-)
NZO/HlLtJ	ENSMUSG00225031543	lncRNA gene	Chr17:82929012-82931274 (-)
PWK/PhJ	ENSLUMG00010005657	lncRNA gene	Chr17:76599739-76602010 (-)
SPRET/EiJ	ENSMSPG00010009203	lncRNA gene	Chr17:77088798-77091051 (-)
WSB/EiJ	ENSIUOG00005010926	lncRNA gene	Chr17:77637809-77640075 (-)

Homology

• Gene Tree
  Gm56880
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000120134 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120134	Ensembl Gene Model | MGI Sequence Detail	2549	C57BL/6J
transcript	ENSMUST00000241540	Ensembl | MGI Sequence Detail	2549	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56880:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr149511	Chr17:81241251-81241260 (-)	1 bp
Tssr149510	Chr17:81240908-81240926 (-)	340 bp