Gm56877 Gene Detail

Summary

• Symbol
  Gm56877
• Name
  predicted gene, 56877

• Feature Type
  lncRNA gene
• IDs
  MGI:7337667
• Alliance
  genome feature page
• Transcription Start Sites
  4 TSS

Location &
Maps

• Sequence Map
  Chr8:72043373-72044735 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  109 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337667	lncRNA gene	Chr8:72043373-72044735 (-)
129S1/SvImJ	ENSMUSG00200032844	lncRNA gene	Chr8:66640700-66642059 (-)
A/J	ENSMUSG00195017472	lncRNA gene	Chr8:67088666-67090028 (-)
AKR/J	ENSMUSG00220025125	lncRNA gene	Chr8:67125822-67127187 (-)
BALB/cJ	ENSMUSG00180028815	lncRNA gene	Chr8:66823710-66825069 (-)
C3H/HeJ	ENSMUSG00175022078	lncRNA gene	Chr8:67025949-67027308 (-)
C57BL/6NJ	ENSMUSG00215037165	lncRNA gene	Chr8:66600995-66602356 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005039772	lncRNA gene	Chr8:66630205-66631567 (-)
CBA/J	ENSMUSG00210035220	lncRNA gene	Chr8:66869544-66870903 (-)
DBA/2J	ENSMUSG00185013589	lncRNA gene	Chr8:73029183-73030542 (-)
FVB/NJ	ENSMUSG00205042552	lncRNA gene	Chr8:66121514-66122873 (-)
JF1/MsJ	ENSUMUG00000040303	lncRNA gene	Chr8:75296957-75298319 (-)
LP/J	ENSMUSG00230034796	lncRNA gene	Chr8:76640846-76642205 (-)
NOD/ShiLtJ	ENSMUSG00190031232	lncRNA gene	Chr8:66784144-66785506 (-)
NZO/HlLtJ	ENSMUSG00225048737	lncRNA gene	Chr8:80040782-80042141 (-)
PWK/PhJ	ENSLUMG00010035017	lncRNA gene	Chr8:66763137-66764502 (-)
SPRET/EiJ	ENSMSPG00010041369	lncRNA gene	Chr8:68445850-68447212 (-)
WSB/EiJ	ENSIUOG00005027206	lncRNA gene	Chr8:67636800-67638165 (-)

Homology

• Gene Tree
  Gm56877
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000120970 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120970	Ensembl Gene Model | MGI Sequence Detail	1363	C57BL/6J
transcript	ENSMUST00000246716	Ensembl | MGI Sequence Detail	1363	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56877:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr81743	Chr8:72045114-72045148 (-)	-396 bp
Tssr81742	Chr8:72045085-72045099 (-)	-357 bp
Tssr81741	Chr8:72044680-72044716 (-)	37 bp
Tssr81740	Chr8:72044645-72044666 (-)	79 bp