Gm56876 Gene Detail

Summary

• Symbol
  Gm56876
• Name
  predicted gene, 56876

• Feature Type
  lncRNA gene
• IDs
  MGI:7337665
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr8:123196945-123198097 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  95 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337665	lncRNA gene	Chr8:123196945-123198097 (+)
129S1/SvImJ	ENSMUSG00200043316	lncRNA gene	Chr8:117528209-117529352 (+)
A/J	ENSMUSG00195026800	lncRNA gene	Chr8:117818475-117819618 (+)
AKR/J	ENSMUSG00220044364	lncRNA gene	Chr8:118009644-118010787 (+)
BALB/cJ	ENSMUSG00180030314	lncRNA gene	Chr8:117864514-117865657 (+)
C3H/HeJ	ENSMUSG00175032715	lncRNA gene	Chr8:117921388-117922531 (+)
C57BL/6NJ	ENSMUSG00215033491	lncRNA gene	Chr8:117502914-117504056 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005035897	lncRNA gene	Chr8:117249635-117250781 (+)
CBA/J	ENSMUSG00210038673	lncRNA gene	Chr8:117855384-117856526 (+)
DBA/2J	ENSMUSG00185037626	lncRNA gene	Chr8:123960306-123961448 (+)
FVB/NJ	ENSMUSG00205037464	lncRNA gene	Chr8:116821591-116822734 (+)
JF1/MsJ	ENSUMUG00000039864	lncRNA gene	Chr8:126261018-126262162 (+)
LP/J	ENSMUSG00230031704	lncRNA gene	Chr8:127579656-127580799 (+)
NOD/ShiLtJ	ENSMUSG00190022375	lncRNA gene	Chr8:117955920-117957063 (+)
NZO/HlLtJ	ENSMUSG00225043899	lncRNA gene	Chr8:130960781-130961923 (+)
PWK/PhJ	ENSLUMG00010040865	lncRNA gene	Chr8:117665861-117667008 (+)
SPRET/EiJ	ENSMSPG00010041516	lncRNA gene	Chr8:119857247-119858384 (+)
WSB/EiJ	ENSIUOG00005030644	lncRNA gene	Chr8:118650303-118651444 (+)

Homology

• Gene Tree
  Gm56876
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000121195 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000121195	Ensembl Gene Model | MGI Sequence Detail	1153	C57BL/6J
transcript	ENSMUST00000247427	Ensembl | MGI Sequence Detail	1153	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56876:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr79871	Chr8:123196935-123196951 (+)	-2 bp
Tssr79872	Chr8:123196966-123196971 (+)	24 bp