Gm56873 Gene Detail

Summary

• Symbol
  Gm56873
• Name
  predicted gene, 56873

• Feature Type
  lncRNA gene
• IDs
  MGI:7337659
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr8:71812893-71821932 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  213 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337659	lncRNA gene	Chr8:71812893-71821932 (-)
129S1/SvImJ	ENSMUSG00200033030	lncRNA gene	Chr8:66416038-66416416 (-)
A/J	ENSMUSG00195019094	lncRNA gene	Chr8:66864897-66865275 (-)
AKR/J	ENSMUSG00220025194	lncRNA gene	Chr8:66902495-66902873 (-)
BALB/cJ	ENSMUSG00180029103	lncRNA gene	Chr8:66598792-66599170 (-)
C3H/HeJ	ENSMUSG00175022248	lncRNA gene	Chr8:66801241-66801619 (-)
C57BL/6NJ	ENSMUSG00215038105	lncRNA gene	Chr8:66377232-66377610 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005039650	lncRNA gene	Chr8:66401983-66402361 (-)
CBA/J	ENSMUSG00210034648	lncRNA gene	Chr8:66644849-66645227 (-)
DBA/2J	ENSMUSG00185013201	lncRNA gene	Chr8:72804485-72804863 (-)
FVB/NJ	ENSMUSG00205043468	lncRNA gene	Chr8:65896816-65897194 (-)
JF1/MsJ	ENSUMUG00000043439	lncRNA gene	Chr8:75068391-75068769 (-)
LP/J	ENSMUSG00230035092	lncRNA gene	Chr8:76415973-76416351 (-)
NOD/ShiLtJ	ENSMUSG00190034177	lncRNA gene	Chr8:66560434-66560812 (-)
NZO/HlLtJ	ENSMUSG00225048424	lncRNA gene	Chr8:79816104-79816482 (-)
PWK/PhJ	ENSLUMG00010035092	lncRNA gene	Chr8:66532694-66533072 (-)
SPRET/EiJ	ENSMSPG00010042414	lncRNA gene	Chr8:68224298-68224689 (-)
WSB/EiJ	ENSIUOG00005026687	lncRNA gene	Chr8:67413551-67413929 (-)

Homology

• Gene Tree
  Gm56873
  

Sequences &
Gene Models

• All Sequences
  29

• Ensembl
  ENSMUSG00000120986 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120986	Ensembl Gene Model | MGI Sequence Detail	9040	C57BL/6J
transcript	ENSMUST00000246775	Ensembl | MGI Sequence Detail	742	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56873:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr2602	Chr8:71820074-71820087 (-)	1,851 bp