Gm56872 Gene Detail

Summary

• Symbol
  Gm56872
• Name
  predicted gene, 56872

• Feature Type
  lncRNA gene
• IDs
  MGI:7337657
• Alliance
  genome feature page
• Transcription Start Sites
  4 TSS

Location &
Maps

• Sequence Map
  Chr8:123283578-123292701 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  433 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337657	lncRNA gene	Chr8:123283578-123292701 (+)
129S1/SvImJ	ENSMUSG00200043312	lncRNA gene	Chr8:117622890-117623916 (+)
A/J	ENSMUSG00195026790	lncRNA gene	Chr8:117913345-117914368 (+)
AKR/J	ENSMUSG00220044351	lncRNA gene	Chr8:118104511-118105534 (+)
BALB/cJ	ENSMUSG00180030297	lncRNA gene	Chr8:117959392-117960415 (+)
C3H/HeJ	ENSMUSG00175032695	lncRNA gene	Chr8:118016259-118017282 (+)
C57BL/6NJ	ENSMUSG00215033465	lncRNA gene	Chr8:117597652-117598680 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005035997	lncRNA gene	Chr8:117344839-117345868 (+)
CBA/J	ENSMUSG00210038654	lncRNA gene	Chr8:117950120-117951148 (+)
DBA/2J	ENSMUSG00185037601	lncRNA gene	Chr8:124055040-124056068 (+)
FVB/NJ	ENSMUSG00205037435	lncRNA gene	Chr8:116916292-116917320 (+)
JF1/MsJ	ENSUMUG00000039843	lncRNA gene	Chr8:126355007-126356047 (+)
LP/J	ENSMUSG00230031648	lncRNA gene	Chr8:127674334-127675360 (+)
NOD/ShiLtJ	ENSMUSG00190022357	lncRNA gene	Chr8:118050617-118051645 (+)
NZO/HlLtJ	ENSMUSG00225043755	lncRNA gene	Chr8:131055536-131056564 (+)
PWK/PhJ	ENSLUMG00010040860	lncRNA gene	Chr8:117759749-117760799 (+)
SPRET/EiJ	ENSMSPG00010041554	lncRNA gene	Chr8:119952384-119953175 (+)
WSB/EiJ	ENSIUOG00005030635	lncRNA gene	Chr8:118744580-118745606 (+)

Homology

• Gene Tree
  Gm56872
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  18
• Gene trapped
  18
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  22

• Ensembl
  ENSMUSG00000121163 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000121163	Ensembl Gene Model | MGI Sequence Detail	9124	C57BL/6J
transcript	ENSMUST00000247355	Ensembl | MGI Sequence Detail	1060	Not Applicable

References

• Summaries
  All 4

  Phenotypes 3
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for Gm56872:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr79881	Chr8:123284585-123284634 (+)	1,032 bp
Tssr79882	Chr8:123291312-123291352 (+)	7,754 bp
Tssr79883	Chr8:123291522-123291539 (+)	7,953 bp
Tssr79884	Chr8:123291657-123291695 (+)	8,098 bp