Gm56871 Gene Detail

Summary

• Symbol
  Gm56871
• Name
  predicted gene, 56871

• Feature Type
  lncRNA gene
• IDs
  MGI:7337655
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr8:121017388-121020357 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  212 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337655	lncRNA gene	Chr8:121017388-121020357 (-)
129S1/SvImJ	ENSMUSG00200043079	lncRNA gene	Chr8:115358596-115361563 (-)
A/J	ENSMUSG00195027695	lncRNA gene	Chr8:115643632-115646599 (-)
AKR/J	ENSMUSG00220043407	lncRNA gene	Chr8:115833960-115836927 (-)
BALB/cJ	ENSMUSG00180029248	lncRNA gene	Chr8:115689492-115692459 (-)
C3H/HeJ	ENSMUSG00175032229	lncRNA gene	Chr8:115745873-115748840 (-)
C57BL/6NJ	ENSMUSG00215037413	lncRNA gene	Chr8:115319680-115322647 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005035963	lncRNA gene	Chr8:115063865-115066810 (-)
CBA/J	ENSMUSG00210037284	lncRNA gene	Chr8:115673201-115676168 (-)
DBA/2J	ENSMUSG00185038605	lncRNA gene	Chr8:121777185-121780152 (-)
FVB/NJ	ENSMUSG00205041009	lncRNA gene	Chr8:114654137-114657104 (-)
JF1/MsJ	ENSUMUG00000037735	lncRNA gene	Chr8:124064158-124067129 (-)
LP/J	ENSMUSG00230031986	lncRNA gene	Chr8:125411897-125414864 (-)
NOD/ShiLtJ	ENSMUSG00190020924	lncRNA gene	Chr8:115787698-115790665 (-)
NZO/HlLtJ	ENSMUSG00225044264	lncRNA gene	Chr8:128777928-128780895 (-)
PWK/PhJ	ENSLUMG00010040809	lncRNA gene	Chr8:115482992-115485930 (-)
SPRET/EiJ	ENSMSPG00010042401	lncRNA gene	Chr8:117685171-117688129 (-)
WSB/EiJ	ENSIUOG00005031000	lncRNA gene	Chr8:116487103-116490071 (-)

Homology

• Gene Tree
  Gm56871
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000121159 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000121159	Ensembl Gene Model | MGI Sequence Detail	2970	C57BL/6J
transcript	ENSMUST00000247350	Ensembl | MGI Sequence Detail	1696	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56871:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr83188	Chr8:121020347-121020361 (-)	3 bp