Gm56870 Gene Detail

Summary

• Symbol
  Gm56870
• Name
  predicted gene, 56870

• Feature Type
  lncRNA gene
• IDs
  MGI:7337653
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr8:41670669-41670991 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  159 from dbSNP Build 142
• Strain Annotations
  16

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337653	lncRNA gene	Chr8:41670669-41670991 (-)
129S1/SvImJ	ENSMUSG00200007763	lncRNA gene	Chr8:36729042-36729268 (-)
A/J	ENSMUSG00195006124	lncRNA gene	Chr8:37221215-37221441 (-)
AKR/J	ENSMUSG00220006437	lncRNA gene	Chr8:37026135-37026361 (-)
BALB/cJ	ENSMUSG00180003312	lncRNA gene	Chr8:36765972-36766198 (-)
C3H/HeJ	ENSMUSG00175015117	lncRNA gene	Chr8:36943938-36944164 (-)
C57BL/6NJ	ENSMUSG00215009529	lncRNA gene	Chr8:36743144-36743382 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005005845	lncRNA gene	Chr8:36853755-36853985 (-)
CBA/J	ENSMUSG00210012805	lncRNA gene	Chr8:36784125-36784351 (-)
DBA/2J	ENSMUSG00185006062	lncRNA gene	Chr8:42684667-42684893 (-)
FVB/NJ	ENSMUSG00205002417	lncRNA gene	Chr8:35939338-35939564 (-)
JF1/MsJ	ENSUMUG00000015900	lncRNA gene	Chr8:44404058-44404296 (-)
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190015936	lncRNA gene	Chr8:36804915-36805141 (-)
NZO/HlLtJ	no annotation
PWK/PhJ	ENSLUMG00010013243	lncRNA gene	Chr8:36634072-36634310 (-)
SPRET/EiJ	ENSMSPG00010004552	lncRNA gene	Chr8:37482597-37482835 (-)
WSB/EiJ	ENSIUOG00005005680	lncRNA gene	Chr8:37669486-37669712 (-)

Homology

• Gene Tree
  Gm56870
  

Sequences &
Gene Models

• All Sequences
  18

• Ensembl
  ENSMUSG00000121156 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000121156	Ensembl Gene Model | MGI Sequence Detail	323	C57BL/6J
transcript	ENSMUST00000247334	Ensembl | MGI Sequence Detail	323	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56870:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr81107	Chr8:41670933-41670964 (-)	42 bp