Gm56869 Gene Detail

Summary

• Symbol
  Gm56869
• Name
  predicted gene, 56869

• Feature Type
  lncRNA gene
• IDs
  MGI:7337651
• Alliance
  genome feature page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr8:37016481-37018484 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  149 from dbSNP Build 142
• Strain Annotations
  16

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337651	lncRNA gene	Chr8:37016481-37018484 (+)
129S1/SvImJ	ENSMUSG00200008236	lncRNA gene	Chr8:32136490-32138505 (+)
A/J	ENSMUSG00195006149	lncRNA gene	Chr8:32617168-32619183 (+)
AKR/J	ENSMUSG00220005927	lncRNA gene	Chr8:32381107-32383122 (+)
BALB/cJ	ENSMUSG00180003247	lncRNA gene	Chr8:32160464-32162479 (+)
C3H/HeJ	ENSMUSG00175015445	lncRNA gene	Chr8:32322885-32324900 (+)
C57BL/6NJ	ENSMUSG00215008789	lncRNA gene	Chr8:32085848-32087851 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005005813	lncRNA gene	Chr8:32281833-32283836 (+)
CBA/J	ENSMUSG00210012841	lncRNA gene	Chr8:32145867-32147882 (+)
DBA/2J	ENSMUSG00185002435	lncRNA gene	Chr8:38072127-38074142 (+)
FVB/NJ	ENSMUSG00205002354	lncRNA gene	Chr8:31358513-31360528 (+)
JF1/MsJ	ENSUMUG00000008945	lncRNA gene	Chr8:39766269-39768272 (+)
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190016125	lncRNA gene	Chr8:32194353-32196368 (+)
NZO/HlLtJ	no annotation
PWK/PhJ	ENSLUMG00010012842	lncRNA gene	Chr8:31976446-31978449 (+)
SPRET/EiJ	ENSMSPG00010004630	lncRNA gene	Chr8:32713093-32715119 (+)
WSB/EiJ	ENSIUOG00005005963	lncRNA gene	Chr8:32969370-32971391 (+)

Homology

• Gene Tree
  Gm56869
  

Sequences &
Gene Models

• All Sequences
  18

• Ensembl
  ENSMUSG00000121155 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000121155	Ensembl Gene Model | MGI Sequence Detail	2004	C57BL/6J
transcript	ENSMUST00000247328	Ensembl | MGI Sequence Detail	2004	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56869:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr76923	Chr8:37016505-37016525 (+)	34 bp
Tssr76924	Chr8:37016535-37016540 (+)	57 bp
Tssr76925	Chr8:37016573-37016582 (+)	97 bp