Gm56865 Gene Detail

Summary

• Symbol
  Gm56865
• Name
  predicted gene, 56865

• Feature Type
  lncRNA gene
• IDs
  MGI:7337643
• Alliance
  genome feature page
• Transcription Start Sites
  4 TSS

Location &
Maps

• Sequence Map
  Chr8:39472484-39473442 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  161 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337643	lncRNA gene	Chr8:39472484-39473442 (-)
129S1/SvImJ	ENSMUSG00200008084	lncRNA gene	Chr8:34605005-34605863 (-)
A/J	ENSMUSG00195005977	lncRNA gene	Chr8:35079757-35080615 (-)
AKR/J	ENSMUSG00220005895	lncRNA gene	Chr8:34874052-34874910 (-)
BALB/cJ	ENSMUSG00180003461	lncRNA gene	Chr8:34624597-34625455 (-)
C3H/HeJ	ENSMUSG00175015171	lncRNA gene	Chr8:34799494-34800352 (-)
C57BL/6NJ	ENSMUSG00215008904	lncRNA gene	Chr8:34542440-34543298 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005005883	lncRNA gene	Chr8:34741250-34742108 (-)
CBA/J	ENSMUSG00210012795	lncRNA gene	Chr8:34621943-34622801 (-)
DBA/2J	ENSMUSG00185006274	lncRNA gene	Chr8:40543337-40544195 (-)
FVB/NJ	ENSMUSG00205002377	lncRNA gene	Chr8:33808118-33808976 (-)
JF1/MsJ	ENSUMUG00000015764	lncRNA gene	Chr8:42223937-42224795 (-)
LP/J	ENSMUSG00230009836	lncRNA gene	Chr8:44193250-44194108 (-)
NOD/ShiLtJ	ENSMUSG00190016059	lncRNA gene	Chr8:34659469-34660327 (-)
NZO/HlLtJ	ENSMUSG00225015136	lncRNA gene	Chr8:47802397-47803462 (-)
PWK/PhJ	ENSLUMG00010012964	lncRNA gene	Chr8:34472875-34473733 (-)
SPRET/EiJ	ENSMSPG00010004587	lncRNA gene	Chr8:35207648-35208508 (-)
WSB/EiJ	ENSIUOG00005005889	lncRNA gene	Chr8:35456454-35457519 (-)

Homology

• Gene Tree
  Gm56865
  

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000121133 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000121133	Ensembl Gene Model | MGI Sequence Detail	959	C57BL/6J
transcript	ENSMUST00000247237	Ensembl | MGI Sequence Detail	959	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56865:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr80992	Chr8:39473421-39473427 (-)	18 bp
Tssr80991	Chr8:39473402-39473417 (-)	32 bp
Tssr80990	Chr8:39473369-39473378 (-)	68 bp
Tssr80989	Chr8:39473339-39473346 (-)	99 bp