Gm56859 Gene Detail

Summary

• Symbol
  Gm56859
• Name
  predicted gene, 56859

• Feature Type
  lncRNA gene
• IDs
  MGI:7337631
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr8:112369873-112370561 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  120 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337631	lncRNA gene	Chr8:112369873-112370561 (-)
129S1/SvImJ	ENSMUSG00200014984	lncRNA gene	Chr8:106674506-106675183 (-)
A/J	ENSMUSG00195021643	lncRNA gene	Chr8:106987149-106987826 (-)
AKR/J	ENSMUSG00220015553	lncRNA gene	Chr8:107129586-107130263 (-)
BALB/cJ	ENSMUSG00180025401	lncRNA gene	Chr8:106996821-106997498 (-)
C3H/HeJ	ENSMUSG00175025348	lncRNA gene	Chr8:107059940-107060617 (-)
C57BL/6NJ	ENSMUSG00215036692	lncRNA gene	Chr8:106652442-106653119 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005034910	lncRNA gene	Chr8:106411778-106412477 (-)
CBA/J	ENSMUSG00210036475	lncRNA gene	Chr8:106976500-106977177 (-)
DBA/2J	ENSMUSG00185018577	lncRNA gene	Chr8:113085649-113086326 (-)
FVB/NJ	ENSMUSG00205027173	lncRNA gene	Chr8:105989016-105989693 (-)
JF1/MsJ	ENSUMUG00000020923	lncRNA gene	Chr8:115418923-115419600 (-)
LP/J	ENSMUSG00230036690	lncRNA gene	Chr8:116765376-116766053 (-)
NOD/ShiLtJ	ENSMUSG00190028157	lncRNA gene	Chr8:107127494-107128171 (-)
NZO/HlLtJ	ENSMUSG00225023398	lncRNA gene	Chr8:120116105-120116782 (-)
PWK/PhJ	ENSLUMG00010030251	lncRNA gene	Chr8:106856821-106857497 (-)
SPRET/EiJ	ENSMSPG00010040698	lncRNA gene	Chr8:108979286-108979985 (-)
WSB/EiJ	ENSIUOG00005034538	lncRNA gene	Chr8:107823851-107824528 (-)

Homology

• Gene Tree
  Gm56859
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Gene trapped
  1
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000121020 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000121020	Ensembl Gene Model | MGI Sequence Detail	689	C57BL/6J
transcript	ENSMUST00000246885	Ensembl | MGI Sequence Detail	689	Not Applicable

References

• Summaries
  All 2

  Phenotypes 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:141210 Mouse Genome Informatics (MGI) and National Center for Biotechnology Information (NCBI), Mouse Gene Trap Data Load from dbGSS. Database Download. 2008;

TSS for Gm56859:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr82945	Chr8:112370929-112370957 (-)	-382 bp
Tssr82944	Chr8:112370509-112370529 (-)	42 bp