Gm56857 Gene Detail

Summary

• Symbol
  Gm56857
• Name
  predicted gene, 56857

• Feature Type
  lncRNA gene
• IDs
  MGI:7337627
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr8:57963548-57965366 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  128 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337627	lncRNA gene	Chr8:57963548-57965366 (-)
129S1/SvImJ	ENSMUSG00200007450	lncRNA gene	Chr8:52750016-52750435 (-)
A/J	ENSMUSG00195012143	lncRNA gene	Chr8:53151597-53152016 (-)
AKR/J	ENSMUSG00220005666	lncRNA gene	Chr8:52969339-52969758 (-)
BALB/cJ	ENSMUSG00180014170	lncRNA gene	Chr8:52799515-52799934 (-)
C3H/HeJ	ENSMUSG00175007671	lncRNA gene	Chr8:52976748-52977167 (-)
C57BL/6NJ	ENSMUSG00215008384	lncRNA gene	Chr8:52769476-52769895 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005006697	lncRNA gene	Chr8:52720274-52720697 (-)
CBA/J	ENSMUSG00210009126	lncRNA gene	Chr8:52825717-52826136 (-)
DBA/2J	ENSMUSG00185008908	lncRNA gene	Chr8:58958790-58959209 (-)
FVB/NJ	ENSMUSG00205013617	lncRNA gene	Chr8:52213757-52214176 (-)
JF1/MsJ	ENSUMUG00000011288	lncRNA gene	Chr8:61295058-61295473 (-)
LP/J	ENSMUSG00230007150	lncRNA gene	Chr8:62617814-62618233 (-)
NOD/ShiLtJ	ENSMUSG00190009884	lncRNA gene	Chr8:52746950-52747369 (-)
NZO/HlLtJ	ENSMUSG00225031299	lncRNA gene	Chr8:66049022-66049441 (-)
PWK/PhJ	ENSLUMG00010012954	lncRNA gene	Chr8:52665881-52666296 (-)
SPRET/EiJ	ENSMSPG00010014624	lncRNA gene	Chr8:53749559-53749983 (-)
WSB/EiJ	ENSIUOG00005017689	lncRNA gene	Chr8:53671780-53672203 (-)

Homology

• Gene Tree
  Gm56857
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000120635 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120635	Ensembl Gene Model | MGI Sequence Detail	1819	C57BL/6J
transcript	ENSMUST00000244766	Ensembl | MGI Sequence Detail	1819	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56857:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr81340	Chr8:57964547-57964566 (-)	809 bp