Gm56853 Gene Detail

Summary

• Symbol
  Gm56853
• Name
  predicted gene, 56853

• Feature Type
  lncRNA gene
• IDs
  MGI:7337619
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr8:109448513-109449397 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  114 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337619	lncRNA gene	Chr8:109448513-109449397 (-)
129S1/SvImJ	ENSMUSG00200015083	lncRNA gene	Chr8:103749192-103750076 (-)
A/J	ENSMUSG00195021054	lncRNA gene	Chr8:104062328-104063212 (-)
AKR/J	ENSMUSG00220015500	lncRNA gene	Chr8:104204686-104205570 (-)
BALB/cJ	ENSMUSG00180026471	lncRNA gene	Chr8:104068017-104068901 (-)
C3H/HeJ	ENSMUSG00175025202	lncRNA gene	Chr8:104124799-104125683 (-)
C57BL/6NJ	ENSMUSG00215036199	lncRNA gene	Chr8:103728648-103729532 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005035611	lncRNA gene	Chr8:103469500-103470384 (-)
CBA/J	ENSMUSG00210035847	lncRNA gene	Chr8:104052050-104052934 (-)
DBA/2J	ENSMUSG00185005915	lncRNA gene	Chr8:110160985-110161869 (-)
FVB/NJ	ENSMUSG00205025986	lncRNA gene	Chr8:103036785-103037669 (-)
JF1/MsJ	ENSUMUG00000021435	lncRNA gene	Chr8:112494288-112495172 (-)
LP/J	ENSMUSG00230036841	lncRNA gene	Chr8:113841051-113841935 (-)
NOD/ShiLtJ	ENSMUSG00190028359	lncRNA gene	Chr8:104196796-104197680 (-)
NZO/HlLtJ	ENSMUSG00225023482	lncRNA gene	Chr8:117191727-117192611 (-)
PWK/PhJ	ENSLUMG00010028799	lncRNA gene	Chr8:103944432-103945316 (-)
SPRET/EiJ	ENSMSPG00010041510	lncRNA gene	Chr8:106033827-106034709 (-)
WSB/EiJ	ENSIUOG00005033055	lncRNA gene	Chr8:104852010-104852894 (-)

Homology

• Gene Tree
  Gm56853
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Gene trapped
  1
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000120938 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120938	Ensembl Gene Model | MGI Sequence Detail	885	C57BL/6J
transcript	ENSMUST00000246572	Ensembl | MGI Sequence Detail	885	Not Applicable

References

• Summaries
  All 2

  Phenotypes 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:141210 Mouse Genome Informatics (MGI) and National Center for Biotechnology Information (NCBI), Mouse Gene Trap Data Load from dbGSS. Database Download. 2008;

TSS for Gm56853:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr82819	Chr8:109449389-109449405 (-)	0 bp