Gm56847 Gene Detail

Summary

• Symbol
  Gm56847
• Name
  predicted gene, 56847

• Feature Type
  lncRNA gene
• IDs
  MGI:7337607
• Alliance
  genome feature page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr8:19834644-20593814 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1359 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337607	lncRNA gene	Chr8:19834644-20593814 (+)
129S1/SvImJ	no annotation
A/J	ENSMUSG00195011310	lncRNA gene	Chr8:73786-75958 (+)
AKR/J	ENSMUSG00220033557	lncRNA gene	Chr8:16691053-16693215 (+)
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005040114	lncRNA gene	Chr8:64489986-64492694 (-)
CBA/J	no annotation
DBA/2J	ENSMUSG00185007601	lncRNA gene	Chr8:19815491-19817662 (+)
DBA/2J	ENSMUSG00185007024	lncRNA gene	Chr8:18650851-18653022 (+)
DBA/2J	ENSMUSG00185007453	lncRNA gene	Chr8:17470359-17472530 (+)
FVB/NJ	ENSMUSG00205032010	lncRNA gene	Chr8:16665389-16667560 (+)
JF1/MsJ	no annotation
LP/J	ENSMUSG00230012706	lncRNA gene	Chr8:21326741-21328911 (+)
LP/J	ENSMUSG00230012941	lncRNA gene	Chr8:24000510-24002680 (+)
LP/J	ENSMUSG00230012969	lncRNA gene	Chr8:24434968-24437138 (-)
LP/J	ENSMUSG00230012644	lncRNA gene	Chr8:20641093-20643263 (+)
LP/J	ENSMUSG00230024594	lncRNA gene	Chr8:19529872-19532043 (+)
LP/J	ENSMUSG00230012827	lncRNA gene	Chr8:21758537-21760707 (+)
LP/J	ENSMUSG00230012844	lncRNA gene	Chr8:22098240-22100410 (+)
LP/J	ENSMUSG00230012859	lncRNA gene	Chr8:22499768-22501938 (+)
NOD/ShiLtJ	no annotation
NZO/HlLtJ	ENSMUSG00225042598	lncRNA gene	Chr8:27599672-27601843 (+)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	ENSIUOG00005021525	lncRNA gene	Chr8:16681515-16683686 (+)

Homology

• Gene Tree
  Gm56847
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  3
• Endonuclease-mediated
  1
• Gene trapped
  2
• Genomic Mutations
  1 involving Gm56847
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  46

• Ensembl
  ENSMUSG00000120747 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120747	Ensembl Gene Model | MGI Sequence Detail	759171	C57BL/6J
transcript	ENSMUST00000281052	Ensembl | MGI Sequence Detail	3396	Not Applicable

References

• Summaries
  All 4

  Phenotypes 3
• Earliest
  J:91812 Stryke D, et al., BayGenomics: a resource of insertional mutations in mouse embryonic stem cells. Nucleic Acids Res. 2003 Jan 1;31(1):278-81
• Latest
  J:332494 Dong X, et al., Keratinocyte-derived defensins activate neutrophil-specific receptors Mrgpra2a/b to prevent skin dysbiosis and bacterial infection. Immunity. 2022 Jul 15;55(9):1645-1662

TSS for Gm56847:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr76549	Chr8:19834639-19834674 (+)	13 bp
Tssr2508	Chr8:20555597-20555643 (+)	720,976 bp
Tssr2509	Chr8:20555651-20555663 (+)	721,013 bp