Gm56846 Gene Detail

Summary

• Symbol
  Gm56846
• Name
  predicted gene, 56846

• Feature Type
  lncRNA gene
• IDs
  MGI:7337605
• Alliance
  gene page
• Transcription Start Sites
  6 TSS

Location &
Maps

• Sequence Map
  Chr8:85708320-85717518 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  177 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337605	lncRNA gene	Chr8:85708320-85717518 (-)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm56846
  

Sequences &
Gene Models

• All Sequences
  9

• Ensembl
  ENSMUSG00000120484 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120484	Ensembl Gene Model | MGI Sequence Detail	9199	C57BL/6J
transcript	ENSMUST00000243626	Ensembl | MGI Sequence Detail	2115	Not Applicable

References

• Summaries
  All 3
• Earliest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for Gm56846:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr82233	Chr8:85717540-85717556 (-)	-30 bp
Tssr82232	Chr8:85717499-85717530 (-)	3 bp
Tssr82231	Chr8:85712775-85712848 (-)	4,706 bp
Tssr82230	Chr8:85712695-85712709 (-)	4,816 bp
Tssr82229	Chr8:85712436-85712473 (-)	5,063 bp
Tssr82228	Chr8:85711966-85711973 (-)	5,548 bp