Gm56846 Gene Detail

Summary

• Symbol
  Gm56846
• Name
  predicted gene, 56846

• Feature Type
  lncRNA gene
• IDs
  MGI:7337605
• Alliance
  genome feature page
• Transcription Start Sites
  6 TSS

Location &
Maps

• Sequence Map
  Chr8:85708320-85717518 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  177 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337605	lncRNA gene	Chr8:85708320-85717518 (-)
129S1/SvImJ	ENSMUSG00200025883	lncRNA gene	Chr8:80076903-80077772 (-)
A/J	ENSMUSG00195019857	lncRNA gene	Chr8:80434908-80435777 (-)
AKR/J	ENSMUSG00220023818	lncRNA gene	Chr8:80476510-80477379 (-)
BALB/cJ	ENSMUSG00180021805	lncRNA gene	Chr8:80275614-80276483 (-)
C3H/HeJ	ENSMUSG00175011839	lncRNA gene	Chr8:80370586-80371455 (-)
C57BL/6NJ	ENSMUSG00215021870	lncRNA gene	Chr8:80008310-80009181 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005037528	lncRNA gene	Chr8:79885529-79886399 (-)
CBA/J	ENSMUSG00210020619	lncRNA gene	Chr8:80357716-80358585 (-)
DBA/2J	ENSMUSG00185038842	lncRNA gene	Chr8:86466311-86467180 (-)
FVB/NJ	ENSMUSG00205039204	lncRNA gene	Chr8:79413554-79414423 (-)
JF1/MsJ	ENSUMUG00000038359	lncRNA gene	Chr8:88774995-88775865 (-)
LP/J	ENSMUSG00230030552	lncRNA gene	Chr8:90073895-90074764 (-)
NOD/ShiLtJ	ENSMUSG00190016662	lncRNA gene	Chr8:80434071-80434940 (-)
NZO/HlLtJ	ENSMUSG00225040431	lncRNA gene	Chr8:93469002-93469872 (-)
PWK/PhJ	ENSLUMG00010030918	lncRNA gene	Chr8:80111989-80112859 (-)
SPRET/EiJ	ENSMSPG00010030469	lncRNA gene	Chr8:82025572-82026440 (-)
WSB/EiJ	ENSIUOG00005020598	lncRNA gene	Chr8:81171814-81172684 (-)

Homology

• Gene Tree
  Gm56846
  

Sequences &
Gene Models

• All Sequences
  26

• Ensembl
  ENSMUSG00000120484 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120484	Ensembl Gene Model | MGI Sequence Detail	9199	C57BL/6J
transcript	ENSMUST00000243626	Ensembl | MGI Sequence Detail	2115	Not Applicable

References

• Summaries
  All 3
• Earliest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for Gm56846:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr82233	Chr8:85717540-85717556 (-)	-30 bp
Tssr82232	Chr8:85717499-85717530 (-)	3 bp
Tssr82231	Chr8:85712775-85712848 (-)	4,706 bp
Tssr82230	Chr8:85712695-85712709 (-)	4,816 bp
Tssr82229	Chr8:85712436-85712473 (-)	5,063 bp
Tssr82228	Chr8:85711966-85711973 (-)	5,548 bp