Gm56845 Gene Detail

Summary

• Symbol
  Gm56845
• Name
  predicted gene, 56845

• Feature Type
  lncRNA gene
• IDs
  MGI:7337603
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr8:96534209-96534754 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  90 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337603	lncRNA gene	Chr8:96534209-96534754 (-)
129S1/SvImJ	ENSMUSG00200015313	lncRNA gene	Chr8:90896498-90896874 (-)
A/J	ENSMUSG00195004295	lncRNA gene	Chr8:91231363-91231739 (-)
AKR/J	ENSMUSG00220011893	lncRNA gene	Chr8:91268194-91268570 (-)
BALB/cJ	ENSMUSG00180004367	lncRNA gene	Chr8:91133448-91133824 (-)
C3H/HeJ	ENSMUSG00175002768	lncRNA gene	Chr8:91175802-91176178 (-)
C57BL/6NJ	ENSMUSG00215001375	lncRNA gene	Chr8:90806619-90806995 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005017174	lncRNA gene	Chr8:90631436-90631812 (-)
CBA/J	ENSMUSG00210015569	lncRNA gene	Chr8:91111236-91111612 (-)
DBA/2J	ENSMUSG00185024267	lncRNA gene	Chr8:97220094-97220470 (-)
FVB/NJ	ENSMUSG00205017432	lncRNA gene	Chr8:90220891-90221267 (-)
JF1/MsJ	ENSUMUG00000045125	lncRNA gene	Chr8:99587783-99588159 (-)
LP/J	ENSMUSG00230008317	lncRNA gene	Chr8:100881501-100881877 (-)
NOD/ShiLtJ	ENSMUSG00190013262	lncRNA gene	Chr8:91237052-91237428 (-)
NZO/HlLtJ	ENSMUSG00225011524	lncRNA gene	Chr8:104286451-104286827 (-)
PWK/PhJ	ENSLUMG00010044075	lncRNA gene	Chr8:90959706-90960079 (-)
SPRET/EiJ	ENSMSPG00010006424	lncRNA gene	Chr8:92978014-92978391 (-)
WSB/EiJ	ENSIUOG00005006177	lncRNA gene	Chr8:91945246-91945622 (-)

Homology

• Gene Tree
  Gm56845
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000120760 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120760	Ensembl Gene Model | MGI Sequence Detail	546	C57BL/6J
transcript	ENSMUST00000245667	Ensembl | MGI Sequence Detail	546	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56845:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr82563	Chr8:96534689-96534704 (-)	57 bp