Gm56842 Gene Detail

Summary

• Symbol
  Gm56842
• Name
  predicted gene, 56842

• Feature Type
  lncRNA gene
• IDs
  MGI:7337597
• Alliance
  gene page
• Transcription Start Sites
  5 TSS

Location &
Maps

• Sequence Map
  Chr8:127321309-127325704 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  126 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337597	lncRNA gene	Chr8:127321309-127325704 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm56842
  

Sequences &
Gene Models

• All Sequences
  6

• Ensembl
  ENSMUSG00000120101 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120101	Ensembl Gene Model | MGI Sequence Detail	4396	C57BL/6J
transcript	ENSMUST00000241377	Ensembl | MGI Sequence Detail	1569	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56842:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr80104	Chr8:127321432-127321451 (+)	133 bp
Tssr80105	Chr8:127321532-127321561 (+)	238 bp
Tssr80106	Chr8:127321566-127321592 (+)	270 bp
Tssr80107	Chr8:127321634-127321656 (+)	336 bp
Tssr80108	Chr8:127322955-127322960 (+)	1,649 bp