Gm56842 Gene Detail

Summary

• Symbol
  Gm56842
• Name
  predicted gene, 56842

• Feature Type
  lncRNA gene
• IDs
  MGI:7337597
• Alliance
  genome feature page
• Transcription Start Sites
  5 TSS

Location &
Maps

• Sequence Map
  Chr8:127321309-127325704 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  126 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337597	lncRNA gene	Chr8:127321309-127325704 (+)
129S1/SvImJ	ENSMUSG00200004868	lncRNA gene	Chr8:121568363-121569581 (+)
A/J	ENSMUSG00195003820	lncRNA gene	Chr8:121838729-121839947 (+)
AKR/J	ENSMUSG00220001748	lncRNA gene	Chr8:122026585-122027803 (+)
BALB/cJ	ENSMUSG00180000940	lncRNA gene	Chr8:121883482-121884700 (+)
C3H/HeJ	ENSMUSG00175005266	lncRNA gene	Chr8:121960180-121961398 (+)
C57BL/6NJ	ENSMUSG00215000703	lncRNA gene	Chr8:121554559-121555777 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005007482	lncRNA gene	Chr8:121292182-121293399 (+)
CBA/J	ENSMUSG00210014138	lncRNA gene	Chr8:121886253-121887471 (+)
DBA/2J	ENSMUSG00185037459	lncRNA gene	Chr8:128205285-128206503 (+)
FVB/NJ	ENSMUSG00205038814	lncRNA gene	Chr8:120853785-120855003 (+)
JF1/MsJ	ENSUMUG00000040540	lncRNA gene	Chr8:130382712-130383929 (+)
LP/J	ENSMUSG00230007465	lncRNA gene	Chr8:131750877-131752095 (+)
NOD/ShiLtJ	ENSMUSG00190006800	lncRNA gene	Chr8:121997261-121998479 (+)
NZO/HlLtJ	ENSMUSG00225019991	lncRNA gene	Chr8:135117753-135118971 (+)
PWK/PhJ	ENSLUMG00010041287	lncRNA gene	Chr8:121674176-121675393 (+)
SPRET/EiJ	ENSMSPG00010001782	lncRNA gene	Chr8:123871657-123872842 (+)
WSB/EiJ	ENSIUOG00005003113	lncRNA gene	Chr8:122652146-122653364 (+)

Homology

• Gene Tree
  Gm56842
  

Sequences &
Gene Models

• All Sequences
  23

• Ensembl
  ENSMUSG00000120101 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120101	Ensembl Gene Model | MGI Sequence Detail	4396	C57BL/6J
transcript	ENSMUST00000241377	Ensembl | MGI Sequence Detail	1569	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56842:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr80104	Chr8:127321432-127321451 (+)	133 bp
Tssr80105	Chr8:127321532-127321561 (+)	238 bp
Tssr80106	Chr8:127321566-127321592 (+)	270 bp
Tssr80107	Chr8:127321634-127321656 (+)	336 bp
Tssr80108	Chr8:127322955-127322960 (+)	1,649 bp