Gm56840 Gene Detail

Summary

• Symbol
  Gm56840
• Name
  predicted gene, 56840

• Feature Type
  lncRNA gene
• IDs
  MGI:7337593
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr8:84722849-84723565 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  38 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337593	lncRNA gene	Chr8:84722849-84723565 (-)
129S1/SvImJ	ENSMUSG00200025778	lncRNA gene	Chr8:79095838-79096457 (-)
A/J	ENSMUSG00195019921	lncRNA gene	Chr8:79449068-79449687 (-)
AKR/J	ENSMUSG00220023921	lncRNA gene	Chr8:79495236-79495855 (-)
BALB/cJ	ENSMUSG00180021644	lncRNA gene	Chr8:79294374-79294993 (-)
C3H/HeJ	ENSMUSG00175011953	lncRNA gene	Chr8:79379933-79380552 (-)
C57BL/6NJ	ENSMUSG00215028885	lncRNA gene	Chr8:79017909-79018528 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005037910	lncRNA gene	Chr8:78904664-78905283 (-)
CBA/J	ENSMUSG00210020436	lncRNA gene	Chr8:79372279-79372898 (-)
DBA/2J	ENSMUSG00185038754	lncRNA gene	Chr8:85481064-85481683 (-)
FVB/NJ	ENSMUSG00205039442	lncRNA gene	Chr8:78429228-78429847 (-)
JF1/MsJ	ENSUMUG00000037645	lncRNA gene	Chr8:87784011-87784630 (-)
LP/J	ENSMUSG00230030335	lncRNA gene	Chr8:89092781-89093400 (-)
NOD/ShiLtJ	ENSMUSG00190032228	lncRNA gene	Chr8:79449215-79449834 (-)
NZO/HlLtJ	ENSMUSG00225040776	lncRNA gene	Chr8:92478934-92479553 (-)
PWK/PhJ	ENSLUMG00010029656	lncRNA gene	Chr8:79130816-79131435 (-)
SPRET/EiJ	ENSMSPG00010023878	lncRNA gene	Chr8:81046010-81046622 (-)
WSB/EiJ	ENSIUOG00005016519	lncRNA gene	Chr8:80188981-80189600 (-)

Homology

• Gene Tree
  Gm56840
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000120736 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120736	Ensembl Gene Model | MGI Sequence Detail	717	C57BL/6J
transcript	ENSMUST00000245472	Ensembl | MGI Sequence Detail	717	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56840:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr82055	Chr8:84723492-84723520 (-)	59 bp