Gm56839 Gene Detail

Summary

• Symbol
  Gm56839
• Name
  predicted gene, 56839

• Feature Type
  lncRNA gene
• IDs
  MGI:7337591
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr8:84962088-84965300 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  133 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337591	lncRNA gene	Chr8:84962088-84965300 (+)
129S1/SvImJ	ENSMUSG00200027086	lncRNA gene	Chr8:79333800-79334941 (+)
A/J	ENSMUSG00195019489	lncRNA gene	Chr8:79692239-79693379 (+)
AKR/J	ENSMUSG00220023743	lncRNA gene	Chr8:79733241-79734382 (+)
BALB/cJ	ENSMUSG00180023041	lncRNA gene	Chr8:79532352-79533493 (+)
C3H/HeJ	ENSMUSG00175011817	lncRNA gene	Chr8:79628008-79629148 (+)
C57BL/6NJ	ENSMUSG00215024536	lncRNA gene	Chr8:79259004-79260141 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005038791	lncRNA gene	Chr8:79143217-79144346 (+)
CBA/J	ENSMUSG00210020461	lncRNA gene	Chr8:79615090-79616230 (+)
DBA/2J	ENSMUSG00185039225	lncRNA gene	Chr8:85723702-85724842 (+)
FVB/NJ	ENSMUSG00205041242	lncRNA gene	Chr8:78669546-78670686 (+)
JF1/MsJ	ENSUMUG00000038376	lncRNA gene	Chr8:88025159-88026297 (+)
LP/J	ENSMUSG00230030665	lncRNA gene	Chr8:89330749-89331890 (+)
NOD/ShiLtJ	ENSMUSG00190030790	lncRNA gene	Chr8:79689009-79690150 (+)
NZO/HlLtJ	ENSMUSG00225040927	lncRNA gene	Chr8:92719973-92721110 (+)
PWK/PhJ	ENSLUMG00010030145	lncRNA gene	Chr8:79370671-79371809 (+)
SPRET/EiJ	ENSMSPG00010030773	lncRNA gene	Chr8:81282399-81283534 (+)
WSB/EiJ	ENSIUOG00005016596	lncRNA gene	Chr8:80428884-80430025 (+)

Homology

• Gene Tree
  Gm56839
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  2
• Gene trapped
  2
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  25

• Ensembl
  ENSMUSG00000120710 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120710	Ensembl Gene Model | MGI Sequence Detail	3213	C57BL/6J
transcript	ENSMUST00000245369	Ensembl | MGI Sequence Detail	705	Not Applicable

References

• Summaries
  All 3

  Phenotypes 2
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14

TSS for Gm56839:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr78379	Chr8:84963941-84963960 (+)	1,863 bp