Gm56838 Gene Detail

Summary

• Symbol
  Gm56838
• Name
  predicted gene, 56838

• Feature Type
  lncRNA gene
• IDs
  MGI:7337589
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr8:73022453-73023215 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  99 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337589	lncRNA gene	Chr8:73022453-73023215 (+)
129S1/SvImJ	ENSMUSG00200032617	lncRNA gene	Chr8:67386486-67386968 (+)
A/J	ENSMUSG00195019031	lncRNA gene	Chr8:67732769-67733245 (+)
AKR/J	ENSMUSG00220025324	lncRNA gene	Chr8:67864631-67865113 (+)
BALB/cJ	ENSMUSG00180029705	lncRNA gene	Chr8:67570177-67570659 (+)
C3H/HeJ	ENSMUSG00175023038	lncRNA gene	Chr8:67708218-67708700 (+)
C57BL/6NJ	ENSMUSG00215038578	lncRNA gene	Chr8:67293473-67293949 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005039743	lncRNA gene	Chr8:67322285-67322761 (+)
CBA/J	ENSMUSG00210034985	lncRNA gene	Chr8:67615082-67615564 (+)
DBA/2J	ENSMUSG00185013520	lncRNA gene	Chr8:73775481-73775963 (+)
FVB/NJ	ENSMUSG00205042025	lncRNA gene	Chr8:66865132-66865614 (+)
JF1/MsJ	ENSUMUG00000040462	lncRNA gene	Chr8:76101304-76101780 (+)
LP/J	ENSMUSG00230035782	lncRNA gene	Chr8:77421087-77421569 (+)
NOD/ShiLtJ	ENSMUSG00190030729	lncRNA gene	Chr8:67605670-67606146 (+)
NZO/HlLtJ	ENSMUSG00225049119	lncRNA gene	Chr8:80787068-80787550 (+)
PWK/PhJ	ENSLUMG00010036498	lncRNA gene	Chr8:67504228-67504704 (+)
SPRET/EiJ	ENSMSPG00010040860	lncRNA gene	Chr8:69259087-69259565 (+)
WSB/EiJ	ENSIUOG00005026561	lncRNA gene	Chr8:68378074-68378556 (+)

Homology

• Gene Tree
  Gm56838
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000120692 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120692	Ensembl Gene Model | MGI Sequence Detail	763	C57BL/6J
transcript	ENSMUST00000245233	Ensembl | MGI Sequence Detail	763	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56838:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr77964	Chr8:73022449-73022462 (+)	3 bp
Tssr77965	Chr8:73022547-73022556 (+)	99 bp