Gm56830 Gene Detail

Summary

• Symbol
  Gm56830
• Name
  predicted gene, 56830

• Feature Type
  lncRNA gene
• IDs
  MGI:7337573
• Alliance
  genome feature page
• Transcription Start Sites
  9 TSS

Location &
Maps

• Sequence Map
  Chr8:84917967-84925214 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  192 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337573	lncRNA gene	Chr8:84917967-84925214 (-)
129S1/SvImJ	ENSMUSG00200025675	lncRNA gene	Chr8:79293250-79293703 (-)
A/J	ENSMUSG00195020109	lncRNA gene	Chr8:79652237-79652686 (-)
AKR/J	ENSMUSG00220023541	lncRNA gene	Chr8:79692694-79693147 (-)
BALB/cJ	ENSMUSG00180021266	lncRNA gene	Chr8:79491803-79492256 (-)
C3H/HeJ	ENSMUSG00175011110	lncRNA gene	Chr8:79582649-79583098 (-)
C57BL/6NJ	ENSMUSG00215028428	lncRNA gene	Chr8:79218670-79219124 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005037487	lncRNA gene	Chr8:79103265-79103719 (-)
CBA/J	ENSMUSG00210020358	lncRNA gene	Chr8:79575089-79575538 (-)
DBA/2J	ENSMUSG00185040308	lncRNA gene	Chr8:85683700-85684149 (-)
FVB/NJ	ENSMUSG00205041711	lncRNA gene	Chr8:78629542-78629991 (-)
JF1/MsJ	ENSUMUG00000036549	lncRNA gene	Chr8:87984783-87985237 (-)
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190030543	lncRNA gene	Chr8:79648465-79648913 (-)
NZO/HlLtJ	ENSMUSG00225040772	lncRNA gene	Chr8:92679641-92680095 (-)
PWK/PhJ	ENSLUMG00010031333	lncRNA gene	Chr8:79330259-79330713 (-)
SPRET/EiJ	ENSMSPG00010033795	lncRNA gene	Chr8:81242485-81242917 (-)
WSB/EiJ	ENSIUOG00005016337	lncRNA gene	Chr8:80388237-80388682 (-)

Homology

• Gene Tree
  Gm56830
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  16
• Gene trapped
  16
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  28

• Ensembl
  ENSMUSG00000120586 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120586	Ensembl Gene Model | MGI Sequence Detail	7248	C57BL/6J
transcript	ENSMUST00000244364	Ensembl | MGI Sequence Detail	1861	Not Applicable

References

• Summaries
  All 3

  Phenotypes 2
• Earliest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for Gm56830:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr82081	Chr8:84925032-84925052 (-)	172 bp
Tssr82080	Chr8:84924997-84925023 (-)	204 bp
Tssr82079	Chr8:84924980-84924993 (-)	227 bp
Tssr82078	Chr8:84924554-84924588 (-)	643 bp
Tssr82077	Chr8:84924304-84924309 (-)	907 bp
Tssr82076	Chr8:84924208-84924222 (-)	999 bp
Tssr2623	Chr8:84924096-84924107 (-)	1,112 bp
Tssr82075	Chr8:84919293-84919309 (-)	5,913 bp
Tssr82074	Chr8:84918689-84918737 (-)	6,501 bp