Gm56829 Gene Detail

Summary

• Symbol
  Gm56829
• Name
  predicted gene, 56829

• Feature Type
  lncRNA gene
• IDs
  MGI:7337571
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr8:21090139-21135560 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  54 from dbSNP Build 142
• Strain Annotations
  42

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337571	lncRNA gene	Chr8:21090139-21135560 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	ENSMUSG00220033587	lncRNA gene	Chr8:16691032-16693910 (+)
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005044531	lncRNA gene	Chr2:147114753-147117248 (+)
CBA/J	no annotation
DBA/2J	ENSMUSG00185041769	lncRNA gene	Chr8:21699730-21702957 (+)
DBA/2J	ENSMUSG00185007322	lncRNA gene	Chr8:18930537-18933764 (+)
DBA/2J	ENSMUSG00185041673	lncRNA gene	Chr8:21019224-21022451 (+)
DBA/2J	ENSMUSG00185041595	lncRNA gene	Chr8:20650407-20653634 (+)
DBA/2J	ENSMUSG00185039799	lncRNA gene	Chr8:21427407-21430634 (+)
DBA/2J	ENSMUSG00185041559	lncRNA gene	Chr8:20382113-20385341 (+)
DBA/2J	ENSMUSG00185041864	lncRNA gene	Chr8:21988452-21991680 (+)
DBA/2J	ENSMUSG00185007031	lncRNA gene	Chr8:19211318-19214535 (+)
DBA/2J	ENSMUSG00185041892	lncRNA gene	Chr8:22270997-22274219 (+)
DBA/2J	ENSMUSG00185007289	lncRNA gene	Chr8:17163988-17167205 (+)
FVB/NJ	no annotation
JF1/MsJ	ENSUMUG00000036264	lncRNA gene	Chr8:19685675-19822163 (+)
JF1/MsJ	ENSUMUG00000031438	lncRNA gene	Chr8:23422703-23555372 (+)
JF1/MsJ	ENSUMUG00000028989	lncRNA gene	Chr8:21073582-21076809 (+)
JF1/MsJ	ENSUMUG00000031505	lncRNA gene	Chr8:23682698-23927662 (+)
JF1/MsJ	ENSUMUG00000032041	lncRNA gene	Chr8:21581775-21720356 (+)
LP/J	ENSMUSG00230011999	lncRNA gene	Chr8:23271388-23274604 (+)
LP/J	ENSMUSG00230011997	lncRNA gene	Chr8:20239320-20242536 (+)
LP/J	ENSMUSG00230012281	lncRNA gene	Chr8:20503003-20506230 (+)
LP/J	ENSMUSG00230012307	lncRNA gene	Chr8:20924695-21050476 (+)
LP/J	ENSMUSG00230012370	lncRNA gene	Chr8:21468278-21471505 (+)
LP/J	ENSMUSG00230012389	lncRNA gene	Chr8:22014297-22017513 (+)
LP/J	ENSMUSG00230012462	lncRNA gene	Chr8:24572046-24575273 (-)
LP/J	ENSMUSG00230012875	lncRNA gene	Chr8:22631290-22634506 (+)
LP/J	ENSMUSG00230011977	lncRNA gene	Chr8:25101988-25105204 (-)
LP/J	ENSMUSG00230012443	lncRNA gene	Chr8:24256303-24259519 (+)
LP/J	ENSMUSG00230012579	lncRNA gene	Chr8:26170259-26173481 (+)
LP/J	ENSMUSG00230012951	lncRNA gene	Chr8:24117258-24120485 (+)
LP/J	ENSMUSG00230012001	lncRNA gene	Chr8:23542006-23545222 (+)
NOD/ShiLtJ	no annotation
NZO/HlLtJ	ENSMUSG00225042878	lncRNA gene	Chr8:27184575-27187803 (+)
NZO/HlLtJ	ENSMUSG00225042901	lncRNA gene	Chr8:27882604-27885821 (+)
NZO/HlLtJ	ENSMUSG00225042959	lncRNA gene	Chr8:29513878-29517100 (+)
NZO/HlLtJ	ENSMUSG00225042938	lncRNA gene	Chr8:29085619-29088836 (+)
NZO/HlLtJ	ENSMUSG00225042367	lncRNA gene	Chr8:27321983-27325199 (+)
NZO/HlLtJ	ENSMUSG00225042375	lncRNA gene	Chr8:28308310-28311527 (+)
NZO/HlLtJ	ENSMUSG00225042907	lncRNA gene	Chr8:28169963-28173190 (+)
NZO/HlLtJ	ENSMUSG00225042887	lncRNA gene	Chr8:27453605-27456821 (+)
NZO/HlLtJ	ENSMUSG00225042374	lncRNA gene	Chr8:27741896-27745112 (+)
NZO/HlLtJ	ENSMUSG00225042359	lncRNA gene	Chr8:26921937-26925154 (+)
PWK/PhJ	no annotation
SPRET/EiJ	ENSMSPG00010042756	lncRNA gene	Chr8:66435610-66438756 (-)
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm56829
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Endonuclease-mediated
  1
• Genomic Mutations
  1 involving Gm56829
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  112

• Ensembl
  ENSMUSG00000120442 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120442	Ensembl Gene Model | MGI Sequence Detail	45422	C57BL/6J
transcript	ENSMUST00000292588	Ensembl | MGI Sequence Detail	3578	Not Applicable

References

• Summaries
  All 2

  Phenotypes 1
• Earliest
  J:332494 Dong X, et al., Keratinocyte-derived defensins activate neutrophil-specific receptors Mrgpra2a/b to prevent skin dysbiosis and bacterial infection. Immunity. 2022 Jul 15;55(9):1645-1662

TSS for Gm56829:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr2510	Chr8:21090226-21090243 (+)	96 bp