Gm56826 Gene Detail

Summary

• Symbol
  Gm56826
• Name
  predicted gene, 56826

• Feature Type
  lncRNA gene
• IDs
  MGI:7337565
• Alliance
  genome feature page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr8:35271987-35273608 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  132 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337565	lncRNA gene	Chr8:35271987-35273608 (+)
129S1/SvImJ	ENSMUSG00200007934	lncRNA gene	Chr8:30346025-30347412 (+)
A/J	ENSMUSG00195006414	lncRNA gene	Chr8:30847723-30849122 (+)
AKR/J	ENSMUSG00220006183	lncRNA gene	Chr8:30610525-30611924 (+)
BALB/cJ	ENSMUSG00180003276	lncRNA gene	Chr8:30391080-30392479 (+)
C3H/HeJ	ENSMUSG00175014977	lncRNA gene	Chr8:30553754-30555153 (+)
C57BL/6NJ	ENSMUSG00215009326	lncRNA gene	Chr8:30340863-30342250 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005005624	lncRNA gene	Chr8:30523594-30524980 (+)
CBA/J	ENSMUSG00210012764	lncRNA gene	Chr8:30376691-30378090 (+)
DBA/2J	ENSMUSG00185002131	lncRNA gene	Chr8:36303017-36304416 (+)
FVB/NJ	ENSMUSG00205004673	lncRNA gene	Chr8:29606767-29608154 (+)
JF1/MsJ	ENSUMUG00000008466	lncRNA gene	Chr8:38016628-38018015 (+)
LP/J	ENSMUSG00230016754	lncRNA gene	Chr8:39953405-39954792 (+)
NOD/ShiLtJ	ENSMUSG00190016262	lncRNA gene	Chr8:30424872-30426260 (+)
NZO/HlLtJ	ENSMUSG00225014887	lncRNA gene	Chr8:43553541-43554928 (+)
PWK/PhJ	ENSLUMG00010013278	lncRNA gene	Chr8:30242911-30244297 (+)
SPRET/EiJ	ENSMSPG00010004614	lncRNA gene	Chr8:30929015-30930425 (+)
WSB/EiJ	ENSIUOG00005005720	lncRNA gene	Chr8:31175618-31177017 (+)

Homology

• Gene Tree
  Gm56826
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000120243 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120243	Ensembl Gene Model | MGI Sequence Detail	1622	C57BL/6J
transcript	ENSMUST00000242069	Ensembl | MGI Sequence Detail	1622	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56826:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr76877	Chr8:35272077-35272092 (+)	98 bp
Tssr76878	Chr8:35272212-35272221 (+)	230 bp
Tssr76879	Chr8:35272612-35272627 (+)	633 bp