Gm56824 Gene Detail

Summary

• Symbol
  Gm56824
• Name
  predicted gene, 56824

• Feature Type
  lncRNA gene
• IDs
  MGI:7337561
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr8:127320858-127321308 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  47 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337561	lncRNA gene	Chr8:127320858-127321308 (-)
129S1/SvImJ	ENSMUSG00200004879	lncRNA gene	Chr8:121567791-121568241 (-)
A/J	ENSMUSG00195003829	lncRNA gene	Chr8:121838157-121838607 (-)
AKR/J	ENSMUSG00220001756	lncRNA gene	Chr8:122026013-122026463 (-)
BALB/cJ	ENSMUSG00180000943	lncRNA gene	Chr8:121882909-121883360 (-)
C3H/HeJ	ENSMUSG00175005278	lncRNA gene	Chr8:121959608-121960058 (-)
C57BL/6NJ	ENSMUSG00215000706	lncRNA gene	Chr8:121553987-121554437 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005007497	lncRNA gene	Chr8:121291610-121292060 (-)
CBA/J	ENSMUSG00210014143	lncRNA gene	Chr8:121885681-121886131 (-)
DBA/2J	ENSMUSG00185037500	lncRNA gene	Chr8:128204713-128205163 (-)
FVB/NJ	ENSMUSG00205038923	lncRNA gene	Chr8:120853213-120853663 (-)
JF1/MsJ	ENSUMUG00000040641	lncRNA gene	Chr8:130382140-130382590 (-)
LP/J	ENSMUSG00230007584	lncRNA gene	Chr8:131750305-131750755 (-)
NOD/ShiLtJ	ENSMUSG00190006813	lncRNA gene	Chr8:121996689-121997139 (-)
NZO/HlLtJ	ENSMUSG00225020191	lncRNA gene	Chr8:135117181-135117631 (-)
PWK/PhJ	ENSLUMG00010041298	lncRNA gene	Chr8:121673604-121674054 (-)
SPRET/EiJ	ENSMSPG00010001780	lncRNA gene	Chr8:123871085-123871535 (-)
WSB/EiJ	ENSIUOG00005003123	lncRNA gene	Chr8:122651574-122652024 (-)

Homology

• Gene Tree
  Gm56824
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000120025 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120025	Ensembl Gene Model | MGI Sequence Detail	451	C57BL/6J
transcript	ENSMUST00000241069	Ensembl | MGI Sequence Detail	451	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56824:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr83512	Chr8:127321301-127321307 (-)	4 bp