Gm56823 Gene Detail

Summary

• Symbol
  Gm56823
• Name
  predicted gene, 56823

• Feature Type
  lncRNA gene
• IDs
  MGI:7337559
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr8:103512742-103513269 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  139 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337559	lncRNA gene	Chr8:103512742-103513269 (-)
129S1/SvImJ	ENSMUSG00200015540	lncRNA gene	Chr8:97809754-97810281 (-)
A/J	ENSMUSG00195004085	lncRNA gene	Chr8:98194619-98195146 (-)
AKR/J	ENSMUSG00220012150	lncRNA gene	Chr8:98256060-98256587 (-)
BALB/cJ	ENSMUSG00180004075	lncRNA gene	Chr8:98118518-98119045 (-)
C3H/HeJ	ENSMUSG00175002881	lncRNA gene	Chr8:98169341-98169868 (-)
C57BL/6NJ	ENSMUSG00215001331	lncRNA gene	Chr8:97790434-97790961 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005023572	lncRNA gene	Chr8:97570227-97570751 (-)
CBA/J	ENSMUSG00210015543	lncRNA gene	Chr8:98097916-98098443 (-)
DBA/2J	ENSMUSG00185005961	lncRNA gene	Chr8:104205747-104206274 (-)
FVB/NJ	ENSMUSG00205017738	lncRNA gene	Chr8:97145812-97146339 (-)
JF1/MsJ	ENSUMUG00000017322	lncRNA gene	Chr8:106540617-106541144 (-)
LP/J	ENSMUSG00230008442	lncRNA gene	Chr8:107889198-107889725 (-)
NOD/ShiLtJ	ENSMUSG00190013756	lncRNA gene	Chr8:98242794-98243321 (-)
NZO/HlLtJ	ENSMUSG00225011757	lncRNA gene	Chr8:111242277-111242804 (-)
PWK/PhJ	ENSLUMG00010004043	lncRNA gene	Chr8:98063975-98064502 (-)
SPRET/EiJ	ENSMSPG00010006451	lncRNA gene	Chr8:100140352-100140885 (-)
WSB/EiJ	ENSIUOG00005006227	lncRNA gene	Chr8:98911277-98911803 (-)

Homology

• Gene Tree
  Gm56823
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000120064 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120064	Ensembl Gene Model | MGI Sequence Detail	528	C57BL/6J
transcript	ENSMUST00000241189	Ensembl | MGI Sequence Detail	528	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56823:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr82590	Chr8:103513263-103513283 (-)	-4 bp