Gm56822 Gene Detail

Summary

• Symbol
  Gm56822
• Name
  predicted gene, 56822

• Feature Type
  lncRNA gene
• IDs
  MGI:7337557
• Alliance
  genome feature page
• Transcription Start Sites
  4 TSS

Location &
Maps

• Sequence Map
  Chr8:109871851-109978547 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  2774 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337557	lncRNA gene	Chr8:109871851-109978547 (-)
129S1/SvImJ	ENSMUSG00200015105	lncRNA gene	Chr8:104276062-104279400 (-)
A/J	ENSMUSG00195021118	lncRNA gene	Chr8:104589276-104592613 (-)
AKR/J	ENSMUSG00220015516	lncRNA gene	Chr8:104731594-104734932 (-)
BALB/cJ	ENSMUSG00180026598	lncRNA gene	Chr8:104594961-104598298 (-)
C3H/HeJ	ENSMUSG00175025239	lncRNA gene	Chr8:104651681-104655018 (-)
C57BL/6NJ	ENSMUSG00215036356	lncRNA gene	Chr8:104255362-104258698 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005035653	lncRNA gene	Chr8:103995745-103999085 (-)
CBA/J	ENSMUSG00210035936	lncRNA gene	Chr8:104578870-104582207 (-)
DBA/2J	ENSMUSG00185005927	lncRNA gene	Chr8:110687890-110691227 (-)
FVB/NJ	ENSMUSG00205026171	lncRNA gene	Chr8:103563779-103567115 (-)
JF1/MsJ	ENSUMUG00000021552	lncRNA gene	Chr8:113021182-113024519 (-)
LP/J	ENSMUSG00230036756	lncRNA gene	Chr8:114367896-114371233 (-)
NOD/ShiLtJ	ENSMUSG00190028445	lncRNA gene	Chr8:104723660-104726997 (-)
NZO/HlLtJ	ENSMUSG00225023426	lncRNA gene	Chr8:117718628-117721965 (-)
PWK/PhJ	ENSLUMG00010028795	lncRNA gene	Chr8:104480576-104483916 (-)
SPRET/EiJ	ENSMSPG00010041489	lncRNA gene	Chr8:106556796-106560135 (-)
WSB/EiJ	ENSIUOG00005033143	lncRNA gene	Chr8:105379470-105382803 (-)

Homology

• Gene Tree
  Gm56822
  

Sequences &
Gene Models

• All Sequences
  34

• Ensembl
  ENSMUSG00000120008 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120008	Ensembl Gene Model | MGI Sequence Detail	106697	C57BL/6J
transcript	ENSMUST00000241008	Ensembl | MGI Sequence Detail	3588	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56822:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr82825	Chr8:109978330-109978345 (-)	209 bp
Tssr82824	Chr8:109978110-109978123 (-)	430 bp
Tssr82823	Chr8:109978051-109978068 (-)	487 bp
Tssr82822	Chr8:109978027-109978039 (-)	514 bp