Gm56821 Gene Detail

Summary

• Symbol
  Gm56821
• Name
  predicted gene, 56821

• Feature Type
  lncRNA gene
• IDs
  MGI:7337555
• Alliance
  genome feature page
• Transcription Start Sites
  4 TSS

Location &
Maps

• Sequence Map
  Chr8:114817292-114859725 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1665 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337555	lncRNA gene	Chr8:114817292-114859725 (-)
129S1/SvImJ	ENSMUSG00200014871	lncRNA gene	Chr8:109196184-109196673 (-)
A/J	ENSMUSG00195021575	lncRNA gene	Chr8:109475172-109475659 (-)
AKR/J	ENSMUSG00220015696	lncRNA gene	Chr8:109660789-109661276 (-)
BALB/cJ	ENSMUSG00180025253	lncRNA gene	Chr8:109521377-109521866 (-)
C3H/HeJ	ENSMUSG00175025918	lncRNA gene	Chr8:109573463-109573950 (-)
C57BL/6NJ	ENSMUSG00215038163	lncRNA gene	Chr8:109147716-109148203 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005034673	lncRNA gene	Chr8:108890116-108890614 (-)
CBA/J	ENSMUSG00210036879	lncRNA gene	Chr8:109474763-109475250 (-)
DBA/2J	ENSMUSG00185018536	lncRNA gene	Chr8:115573739-115574226 (-)
FVB/NJ	ENSMUSG00205025360	lncRNA gene	Chr8:108489508-108489995 (-)
JF1/MsJ	ENSUMUG00000020768	lncRNA gene	Chr8:117907405-117907894 (-)
LP/J	ENSMUSG00230036409	lncRNA gene	Chr8:119253489-119253978 (-)
NOD/ShiLtJ	ENSMUSG00190030954	lncRNA gene	Chr8:109616386-109616873 (-)
NZO/HlLtJ	ENSMUSG00225043578	lncRNA gene	Chr8:122604723-122605210 (-)
PWK/PhJ	ENSLUMG00010029795	lncRNA gene	Chr8:109381987-109382474 (-)
SPRET/EiJ	ENSMSPG00010042040	lncRNA gene	Chr8:111524638-111525113 (-)
WSB/EiJ	ENSIUOG00005034489	lncRNA gene	Chr8:110344418-110344931 (-)

Homology

• Gene Tree
  Gm56821
  

Sequences &
Gene Models

• All Sequences
  54

• Ensembl
  ENSMUSG00000119971 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000119971	Ensembl Gene Model | MGI Sequence Detail	42434	C57BL/6J
transcript	ENSMUST00000255644	Ensembl | MGI Sequence Detail	1335	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56821:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr83008	Chr8:114858337-114858344 (-)	1,384 bp
Tssr83007	Chr8:114858318-114858335 (-)	1,398 bp
Tssr83006	Chr8:114857736-114857750 (-)	1,982 bp
Tssr83005	Chr8:114817500-114817506 (-)	42,222 bp