Gm56820 Gene Detail

Summary

• Symbol
  Gm56820
• Name
  predicted gene, 56820

• Feature Type
  protein coding gene
• IDs
  MGI:7337553
• Alliance
  genome feature page
• Transcription Start Sites
  14 TSS

Location &
Maps

• Sequence Map
  Chr10:78123868-78143453 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  468 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337553	protein coding gene	Chr10:78123868-78143453 (-)
129S1/SvImJ	ENSMUSG00200049892	protein coding gene	Chr10:74801986-74821571 (-)
A/J	ENSMUSG00195048830	protein coding gene	Chr10:75138649-75158235 (-)
AKR/J	ENSMUSG00220042537	protein coding gene	Chr10:74798334-74817919 (-)
BALB/cJ	ENSMUSG00180050095	protein coding gene	Chr10:75153036-75172622 (-)
C3H/HeJ	ENSMUSG00175051636	protein coding gene	Chr10:75024141-75043726 (-)
C57BL/6NJ	ENSMUSG00215051715	protein coding gene	Chr10:74761894-74781482 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005047578	protein coding gene	Chr10:74638529-74658164 (-)
CBA/J	ENSMUSG00210049614	protein coding gene	Chr10:74880266-74899852 (-)
DBA/2J	ENSMUSG00185051490	protein coding gene	Chr10:75222609-75242195 (-)
FVB/NJ	ENSMUSG00205032137	protein coding gene	Chr10:74914643-74934228 (-)
JF1/MsJ	ENSUMUG00000055225	protein coding gene	Chr10:76382964-76402506 (-)
LP/J	ENSMUSG00230048606	protein coding gene	Chr10:76992093-77011679 (-)
NOD/ShiLtJ	ENSMUSG00190051662	protein coding gene	Chr10:75200047-75219632 (-)
NZO/HlLtJ	ENSMUSG00225046338	protein coding gene	Chr10:81279883-81299466 (-)
PWK/PhJ	ENSLUMG00010050121	protein coding gene	Chr10:74767068-74786624 (-)
SPRET/EiJ	ENSMSPG00010047013	protein coding gene	Chr10:76549579-76569196 (-)
WSB/EiJ	ENSIUOG00005048237	protein coding gene	Chr10:74799570-74819394 (-)

Homology

• Gene Tree
  Gm56820
  

Sequences &
Gene Models

• All Sequences
  22
• UniProt
  1

• Ensembl
  ENSMUSG00000118646 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000118646	Ensembl Gene Model | MGI Sequence Detail	19586	C57BL/6J
transcript	ENSMUST00000239481	Ensembl | MGI Sequence Detail	383	Not Applicable
polypeptide	ENSMUSP00000159333	Ensembl | MGI Sequence Detail	40	Not Applicable

Protein
Information

• UniProt
  1 Sequence

References

• Summaries
  All 2
• Earliest
  J:53168 Bairoch A, et al., SWISS-PROT Annotated protein sequence database. Database Release. 1999;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56820:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr98287	Chr10:78143437-78143453 (-)	8 bp
Tssr98286	Chr10:78143203-78143227 (-)	238 bp
Tssr98285	Chr10:78134126-78134161 (-)	9,309 bp
Tssr98284	Chr10:78134090-78134100 (-)	9,358 bp
Tssr98283	Chr10:78134026-78134037 (-)	9,421 bp
Tssr98282	Chr10:78133996-78134018 (-)	9,446 bp
Tssr98281	Chr10:78133969-78133980 (-)	9,478 bp
Tssr98280	Chr10:78133827-78133832 (-)	9,623 bp
Tssr98279	Chr10:78133749-78133820 (-)	9,668 bp
Tssr98278	Chr10:78133725-78133736 (-)	9,722 bp
Tssr98277	Chr10:78133686-78133697 (-)	9,761 bp
Tssr98276	Chr10:78131253-78131256 (-)	12,198 bp
Tssr98275	Chr10:78131231-78131252 (-)	12,211 bp
Tssr98274	Chr10:78131217-78131222 (-)	12,233 bp