Gm56819 Gene Detail

Summary

• Symbol
  Gm56819
• Name
  predicted gene, 56819

• Feature Type
  lncRNA gene
• IDs
  MGI:7337551
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr3:95857317-95858603 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  164 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337551	lncRNA gene	Chr3:95857317-95858603 (-)
129S1/SvImJ	ENSMUSG00200044756	lncRNA gene	Chr3:92517325-92517719 (-)
A/J	ENSMUSG00195049757	lncRNA gene	Chr3:92841835-92842229 (-)
AKR/J	ENSMUSG00220041352	lncRNA gene	Chr3:91228821-91229215 (-)
BALB/cJ	ENSMUSG00180041254	lncRNA gene	Chr3:92841245-92841639 (-)
C3H/HeJ	ENSMUSG00175033610	lncRNA gene	Chr3:92485475-92485869 (-)
C57BL/6NJ	ENSMUSG00215038966	lncRNA gene	Chr3:93204275-93204669 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005048329	lncRNA gene	Chr3:93037179-93037573 (-)
CBA/J	ENSMUSG00210051343	lncRNA gene	Chr3:93022943-93023337 (-)
DBA/2J	ENSMUSG00185046761	lncRNA gene	Chr3:93440815-93441209 (-)
FVB/NJ	ENSMUSG00205051139	lncRNA gene	Chr3:92136056-92136450 (-)
JF1/MsJ	ENSUMUG00000051160	lncRNA gene	Chr3:92332743-92333137 (-)
LP/J	ENSMUSG00230045896	lncRNA gene	Chr3:95380730-95381124 (-)
NOD/ShiLtJ	ENSMUSG00190049557	lncRNA gene	Chr3:93547917-93548311 (-)
NZO/HlLtJ	ENSMUSG00225012290	lncRNA gene	Chr3:97803423-97803817 (-)
PWK/PhJ	ENSLUMG00010052706	lncRNA gene	Chr3:92312298-92312692 (-)
SPRET/EiJ	ENSMSPG00010047163	lncRNA gene	Chr3:92613155-92613541 (-)
WSB/EiJ	ENSIUOG00005032935	lncRNA gene	Chr3:92960193-92960587 (-)

Homology

• Gene Tree
  Gm56819
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000121104 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000121104	Ensembl Gene Model | MGI Sequence Detail	1287	C57BL/6J
transcript	ENSMUST00000247136	Ensembl | MGI Sequence Detail	1287	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56819:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr34570	Chr3:95858329-95858348 (-)	264 bp