Gm56818 Gene Detail

Summary

• Symbol
  Gm56818
• Name
  predicted gene, 56818

• Feature Type
  lncRNA gene
• IDs
  MGI:7337549
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr3:10407896-10408628 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  154 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337549	lncRNA gene	Chr3:10407896-10408628 (+)
129S1/SvImJ	ENSMUSG00200000882	lncRNA gene	Chr3:7085299-7086031 (+)
A/J	ENSMUSG00195001196	lncRNA gene	Chr3:7426338-7427070 (+)
AKR/J	ENSMUSG00220017144	lncRNA gene	Chr3:7431098-7431830 (+)
BALB/cJ	ENSMUSG00180007316	lncRNA gene	Chr3:7448394-7449126 (+)
C3H/HeJ	ENSMUSG00175005212	lncRNA gene	Chr3:7434698-7435430 (+)
C57BL/6NJ	ENSMUSG00215005703	lncRNA gene	Chr3:7441492-7442224 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005000280	lncRNA gene	Chr3:7491357-7492048 (+)
CBA/J	ENSMUSG00210000786	lncRNA gene	Chr3:7419846-7420578 (+)
DBA/2J	ENSMUSG00185000508	lncRNA gene	Chr3:7418856-7419554 (+)
FVB/NJ	ENSMUSG00205005976	lncRNA gene	Chr3:7234461-7235193 (+)
JF1/MsJ	ENSUMUG00000011100	lncRNA gene	Chr3:7292669-7293403 (+)
LP/J	ENSMUSG00230000243	lncRNA gene	Chr3:9337230-9337962 (+)
NOD/ShiLtJ	ENSMUSG00190023466	lncRNA gene	Chr3:7517027-7517759 (+)
NZO/HlLtJ	ENSMUSG00225001008	lncRNA gene	Chr3:11909776-11910508 (+)
PWK/PhJ	ENSLUMG00010008524	lncRNA gene	Chr3:7376985-7377717 (+)
SPRET/EiJ	ENSMSPG00010000112	lncRNA gene	Chr3:7242078-7242983 (+)
WSB/EiJ	ENSIUOG00005000816	lncRNA gene	Chr3:7430128-7430860 (+)

Homology

• Gene Tree
  Gm56818
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000121077 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000121077	Ensembl Gene Model | MGI Sequence Detail	733	C57BL/6J
transcript	ENSMUST00000247080	Ensembl | MGI Sequence Detail	733	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56818:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr28367	Chr3:10407848-10407897 (+)	-23 bp