Gm56817 Gene Detail

Summary

• Symbol
  Gm56817
• Name
  predicted gene, 56817

• Feature Type
  lncRNA gene
• IDs
  MGI:7337547
• Alliance
  genome feature page
• Transcription Start Sites
  5 TSS

Location &
Maps

• Sequence Map
  Chr3:127582495-127583906 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  116 from dbSNP Build 142
• Strain Annotations
  16

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337547	lncRNA gene	Chr3:127582495-127583906 (-)
129S1/SvImJ	ENSMUSG00200003892	lncRNA gene	Chr3:124317639-124319045 (-)
A/J	ENSMUSG00195008297	lncRNA gene	Chr3:124456392-124457806 (-)
AKR/J	ENSMUSG00220022578	lncRNA gene	Chr3:122897181-122898572 (-)
BALB/cJ	ENSMUSG00180003786	lncRNA gene	Chr3:124383514-124384925 (-)
C3H/HeJ	ENSMUSG00175013925	lncRNA gene	Chr3:123937203-123938607 (-)
C57BL/6NJ	ENSMUSG00215022474	lncRNA gene	Chr3:124728051-124729444 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005003710	lncRNA gene	Chr3:125026160-125027595 (-)
CBA/J	ENSMUSG00210004350	lncRNA gene	Chr3:124560399-124561809 (-)
DBA/2J	ENSMUSG00185026523	lncRNA gene	Chr3:125180956-125182347 (-)
FVB/NJ	ENSMUSG00205030039	lncRNA gene	Chr3:123526505-123527894 (-)
JF1/MsJ	ENSUMUG00000031637	lncRNA gene	Chr3:123928983-123930403 (-)
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190001977	lncRNA gene	Chr3:125583389-125584799 (-)
NZO/HlLtJ	ENSMUSG00225004121	lncRNA gene	Chr3:129615617-129617008 (-)
PWK/PhJ	ENSLUMG00010015666	lncRNA gene	Chr3:123950117-123951560 (-)
SPRET/EiJ	no annotation
WSB/EiJ	ENSIUOG00005017192	lncRNA gene	Chr3:124745200-124746616 (-)

Homology

• Gene Tree
  Gm56817
  

Sequences &
Gene Models

• All Sequences
  18

• Ensembl
  ENSMUSG00000120996 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120996	Ensembl Gene Model | MGI Sequence Detail	1412	C57BL/6J
transcript	ENSMUST00000246808	Ensembl | MGI Sequence Detail	1412	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56817:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr35602	Chr3:127583850-127583867 (-)	47 bp
Tssr35601	Chr3:127583518-127583550 (-)	372 bp
Tssr35600	Chr3:127583492-127583517 (-)	401 bp
Tssr35599	Chr3:127583475-127583489 (-)	424 bp
Tssr35598	Chr3:127583391-127583407 (-)	507 bp