Gm56816 Gene Detail

Summary

• Symbol
  Gm56816
• Name
  predicted gene, 56816

• Feature Type
  lncRNA gene
• IDs
  MGI:7337545
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr3:122778261-122778822 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  150 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337545	lncRNA gene	Chr3:122778261-122778822 (+)
129S1/SvImJ	ENSMUSG00200027410	lncRNA gene	Chr3:119474257-119474616 (+)
A/J	ENSMUSG00195016099	lncRNA gene	Chr3:119688220-119688582 (+)
AKR/J	ENSMUSG00220025728	lncRNA gene	Chr3:118072310-118072672 (+)
BALB/cJ	ENSMUSG00180031415	lncRNA gene	Chr3:119624954-119625316 (+)
C3H/HeJ	ENSMUSG00175028129	lncRNA gene	Chr3:119171504-119171866 (+)
C57BL/6NJ	ENSMUSG00215007976	lncRNA gene	Chr3:119918257-119918619 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005032583	lncRNA gene	Chr3:120203217-120203579 (+)
CBA/J	ENSMUSG00210003099	lncRNA gene	Chr3:119802423-119802785 (+)
DBA/2J	ENSMUSG00185007645	lncRNA gene	Chr3:120360953-120361310 (+)
FVB/NJ	ENSMUSG00205007889	lncRNA gene	Chr3:118736297-118736659 (+)
JF1/MsJ	ENSUMUG00000003516	lncRNA gene	Chr3:119166716-119167073 (+)
LP/J	ENSMUSG00230004356	lncRNA gene	Chr3:122325975-122326334 (+)
NOD/ShiLtJ	ENSMUSG00190034961	lncRNA gene	Chr3:120747295-120747657 (+)
NZO/HlLtJ	ENSMUSG00225003454	lncRNA gene	Chr3:124806248-124806610 (+)
PWK/PhJ	ENSLUMG00010010062	lncRNA gene	Chr3:119175929-119176289 (+)
SPRET/EiJ	ENSMSPG00010031853	lncRNA gene	Chr3:119917659-119918021 (+)
WSB/EiJ	ENSIUOG00005007306	lncRNA gene	Chr3:119970253-119970615 (+)

Homology

• Gene Tree
  Gm56816
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000120150 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120150	Ensembl Gene Model | MGI Sequence Detail	562	C57BL/6J
transcript	ENSMUST00000241616	Ensembl | MGI Sequence Detail	562	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56816:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr31537	Chr3:122778342-122778371 (+)	96 bp