Gm56815 Gene Detail

Summary

• Symbol
  Gm56815
• Name
  predicted gene, 56815

• Feature Type
  lncRNA gene
• IDs
  MGI:7337543
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr3:123058429-123061003 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  211 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337543	lncRNA gene	Chr3:123058429-123061003 (+)
129S1/SvImJ	ENSMUSG00200027676	lncRNA gene	Chr3:119748839-119750700 (+)
A/J	ENSMUSG00195015939	lncRNA gene	Chr3:119961022-119962871 (+)
AKR/J	ENSMUSG00220026026	lncRNA gene	Chr3:118352670-118354525 (+)
BALB/cJ	ENSMUSG00180031229	lncRNA gene	Chr3:119897776-119899622 (+)
C3H/HeJ	ENSMUSG00175027376	lncRNA gene	Chr3:119444278-119446121 (+)
C57BL/6NJ	ENSMUSG00215007614	lncRNA gene	Chr3:120198562-120200417 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005032260	lncRNA gene	Chr3:120484635-120486527 (+)
CBA/J	ENSMUSG00210003084	lncRNA gene	Chr3:120075155-120076998 (+)
DBA/2J	ENSMUSG00185008416	lncRNA gene	Chr3:120635771-120637623 (+)
FVB/NJ	ENSMUSG00205007834	lncRNA gene	Chr3:119013620-119015475 (+)
JF1/MsJ	ENSUMUG00000003969	lncRNA gene	Chr3:119441590-119443445 (+)
LP/J	ENSMUSG00230004306	lncRNA gene	Chr3:122600544-122602402 (+)
NOD/ShiLtJ	ENSMUSG00190034417	lncRNA gene	Chr3:121027593-121029445 (+)
NZO/HlLtJ	ENSMUSG00225003548	lncRNA gene	Chr3:125086541-125088396 (+)
PWK/PhJ	ENSLUMG00010009655	lncRNA gene	Chr3:119458548-119460385 (+)
SPRET/EiJ	ENSMSPG00010030626	lncRNA gene	Chr3:120199452-120201485 (+)
WSB/EiJ	ENSIUOG00005007320	lncRNA gene	Chr3:120258789-120260645 (+)

Homology

• Gene Tree
  Gm56815
  

Sequences &
Gene Models

• All Sequences
  22

• Ensembl
  ENSMUSG00000120630 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120630	Ensembl Gene Model | MGI Sequence Detail	2575	C57BL/6J
transcript	ENSMUST00000244708	Ensembl | MGI Sequence Detail	1190	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56815:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr31540	Chr3:123058425-123058436 (+)	2 bp
Tssr31541	Chr3:123058440-123058467 (+)	25 bp