Gm56814 Gene Detail

Summary

• Symbol
  Gm56814
• Name
  predicted gene, 56814

• Feature Type
  lncRNA gene
• IDs
  MGI:7337541
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr3:100693037-100693808 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  16 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337541	lncRNA gene	Chr3:100693037-100693808 (+)
129S1/SvImJ	ENSMUSG00200045933	lncRNA gene	Chr3:97297606-97298370 (+)
A/J	ENSMUSG00195048769	lncRNA gene	Chr3:97703145-97703909 (+)
AKR/J	ENSMUSG00220042772	lncRNA gene	Chr3:96063303-96064067 (+)
BALB/cJ	ENSMUSG00180044727	lncRNA gene	Chr3:97642783-97643547 (+)
C3H/HeJ	ENSMUSG00175030908	lncRNA gene	Chr3:97189039-97189803 (+)
C57BL/6NJ	ENSMUSG00215039905	lncRNA gene	Chr3:97955059-97955823 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005020363	lncRNA gene	Chr3:97900842-97901606 (+)
CBA/J	ENSMUSG00210051815	lncRNA gene	Chr3:97811244-97812008 (+)
DBA/2J	ENSMUSG00185045264	lncRNA gene	Chr3:98296427-98297191 (+)
FVB/NJ	ENSMUSG00205027601	lncRNA gene	Chr3:96874569-96875333 (+)
JF1/MsJ	ENSUMUG00000050590	lncRNA gene	Chr3:97006821-97007591 (+)
LP/J	ENSMUSG00230047124	lncRNA gene	Chr3:100226275-100227039 (+)
NOD/ShiLtJ	ENSMUSG00190049876	lncRNA gene	Chr3:98483881-98484645 (+)
NZO/HlLtJ	ENSMUSG00225021476	lncRNA gene	Chr3:102676221-102676985 (+)
PWK/PhJ	ENSLUMG00010033207	lncRNA gene	Chr3:97097666-97098436 (+)
SPRET/EiJ	ENSMSPG00010047908	lncRNA gene	Chr3:97348132-97348896 (+)
WSB/EiJ	ENSIUOG00005031392	lncRNA gene	Chr3:97830764-97831528 (+)

Homology

• Gene Tree
  Gm56814
  

Sequences &
Gene Models

• All Sequences
  23

• Ensembl
  ENSMUSG00000120363 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120363	Ensembl Gene Model | MGI Sequence Detail	772	C57BL/6J
transcript	ENSMUST00000245677	Ensembl | MGI Sequence Detail	745	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56814:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr30882	Chr3:100693040-100693072 (+)	19 bp