Gm56811 Gene Detail

Summary

• Symbol
  Gm56811
• Name
  predicted gene, 56811

• Feature Type
  lncRNA gene
• IDs
  MGI:7337535
• Alliance
  genome feature page
• Transcription Start Sites
  4 TSS

Location &
Maps

• Sequence Map
  Chr3:17738673-17841302 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  3006 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337535	lncRNA gene	Chr3:17738673-17841302 (-)
129S1/SvImJ	ENSMUSG00200018303	lncRNA gene	Chr3:14568535-14572125 (-)
A/J	ENSMUSG00195016571	lncRNA gene	Chr3:14639935-14643548 (-)
AKR/J	ENSMUSG00220009180	lncRNA gene	Chr3:14610194-14613803 (-)
BALB/cJ	ENSMUSG00180001037	lncRNA gene	Chr3:14665624-14669216 (-)
C3H/HeJ	ENSMUSG00175003229	lncRNA gene	Chr3:14662983-14666596 (-)
C57BL/6NJ	ENSMUSG00215001453	lncRNA gene	Chr3:14897510-14901117 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005024631	lncRNA gene	Chr3:14597700-14601285 (-)
CBA/J	ENSMUSG00210001692	lncRNA gene	Chr3:14631869-14635482 (-)
DBA/2J	ENSMUSG00185000702	lncRNA gene	Chr3:14787817-14791428 (-)
FVB/NJ	ENSMUSG00205002538	lncRNA gene	Chr3:14178692-14182284 (-)
JF1/MsJ	ENSUMUG00000018792	lncRNA gene	Chr3:14441296-14444892 (-)
LP/J	ENSMUSG00230004472	lncRNA gene	Chr3:16772137-16775729 (-)
NOD/ShiLtJ	ENSMUSG00190002538	lncRNA gene	Chr3:14991036-14994645 (-)
NZO/HlLtJ	ENSMUSG00225001089	lncRNA gene	Chr3:19369833-19373442 (-)
PWK/PhJ	ENSLUMG00010003266	lncRNA gene	Chr3:14515001-14518597 (-)
SPRET/EiJ	ENSMSPG00010001889	lncRNA gene	Chr3:14490802-14494407 (-)
WSB/EiJ	ENSIUOG00005001539	lncRNA gene	Chr3:14837032-14840638 (-)

Homology

• Gene Tree
  Gm56811
  

Sequences &
Gene Models

• All Sequences
  23

• Ensembl
  ENSMUSG00000119974 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000119974	Ensembl Gene Model | MGI Sequence Detail	102630	C57BL/6J
transcript	ENSMUST00000240893	Ensembl | MGI Sequence Detail	5150	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56811:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr32671	Chr3:17815413-17815431 (-)	25,880 bp
Tssr32670	Chr3:17768812-17768816 (-)	72,488 bp
Tssr32669	Chr3:17748776-17748778 (-)	92,525 bp
Tssr32668	Chr3:17746100-17746104 (-)	95,200 bp