Gm56810 Gene Detail

Summary

• Symbol
  Gm56810
• Name
  predicted gene, 56810

• Feature Type
  lncRNA gene
• IDs
  MGI:7337533
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr3:142418578-142420875 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  253 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337533	lncRNA gene	Chr3:142418578-142420875 (+)
129S1/SvImJ	ENSMUSG00200003406	lncRNA gene	Chr3:139232773-139235070 (+)
A/J	ENSMUSG00195004547	lncRNA gene	Chr3:139409194-139411491 (+)
AKR/J	ENSMUSG00220003961	lncRNA gene	Chr3:137812034-137814333 (+)
BALB/cJ	ENSMUSG00180012350	lncRNA gene	Chr3:139279824-139282121 (+)
C3H/HeJ	ENSMUSG00175020412	lncRNA gene	Chr3:138863313-138865610 (+)
C57BL/6NJ	ENSMUSG00215027442	lncRNA gene	Chr3:139601465-139603762 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005031078	lncRNA gene	Chr3:140018315-140020617 (+)
CBA/J	ENSMUSG00210033248	lncRNA gene	Chr3:139548980-139551409 (+)
DBA/2J	ENSMUSG00185003736	lncRNA gene	Chr3:140138614-140140913 (+)
FVB/NJ	ENSMUSG00205026987	lncRNA gene	Chr3:138433979-138436278 (+)
JF1/MsJ	ENSUMUG00000005642	lncRNA gene	Chr3:138949434-138951862 (+)
LP/J	ENSMUSG00230003769	lncRNA gene	Chr3:142045518-142047815 (+)
NOD/ShiLtJ	ENSMUSG00190004991	lncRNA gene	Chr3:140505840-140508139 (+)
NZO/HlLtJ	ENSMUSG00225003027	lncRNA gene	Chr3:144555825-144558124 (+)
PWK/PhJ	ENSLUMG00010022357	lncRNA gene	Chr3:138836270-138838698 (+)
SPRET/EiJ	ENSMSPG00010014943	lncRNA gene	Chr3:140095556-140097682 (+)
WSB/EiJ	ENSIUOG00005019184	lncRNA gene	Chr3:139654444-139656672 (+)

Homology

• Gene Tree
  Gm56810
  

Sequences &
Gene Models

• All Sequences
  22

• Ensembl
  ENSMUSG00000120786 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120786	Ensembl Gene Model | MGI Sequence Detail	2298	C57BL/6J
transcript	ENSMUST00000245792	Ensembl | MGI Sequence Detail	2298	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56810:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr32249	Chr3:142418577-142418582 (+)	2 bp