Gm56809 Gene Detail

Summary

• Symbol
  Gm56809
• Name
  predicted gene, 56809

• Feature Type
  lncRNA gene
• IDs
  MGI:7337531
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr3:108351566-108353366 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  111 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337531	lncRNA gene	Chr3:108351566-108353366 (+)
129S1/SvImJ	ENSMUSG00200035684	lncRNA gene	Chr3:104967585-104968988 (+)
A/J	ENSMUSG00195026541	lncRNA gene	Chr3:105394032-105395435 (+)
AKR/J	ENSMUSG00220032619	lncRNA gene	Chr3:103757683-103759086 (+)
BALB/cJ	ENSMUSG00180020008	lncRNA gene	Chr3:105340103-105341506 (+)
C3H/HeJ	ENSMUSG00175029867	lncRNA gene	Chr3:104874131-104875534 (+)
C57BL/6NJ	ENSMUSG00215033459	lncRNA gene	Chr3:105602017-105603420 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005026764	lncRNA gene	Chr3:105876682-105878085 (+)
CBA/J	ENSMUSG00210008541	lncRNA gene	Chr3:105496009-105497412 (+)
DBA/2J	ENSMUSG00185022486	lncRNA gene	Chr3:105965350-105966753 (+)
FVB/NJ	ENSMUSG00205029460	lncRNA gene	Chr3:104532018-104533421 (+)
JF1/MsJ	ENSUMUG00000005457	lncRNA gene	Chr3:104936867-104938270 (+)
LP/J	ENSMUSG00230021524	lncRNA gene	Chr3:107880572-107881975 (+)
NOD/ShiLtJ	ENSMUSG00190036892	lncRNA gene	Chr3:106203430-106204833 (+)
NZO/HlLtJ	ENSMUSG00225020688	lncRNA gene	Chr3:110382617-110384020 (+)
PWK/PhJ	ENSLUMG00010024576	lncRNA gene	Chr3:104800147-104801550 (+)
SPRET/EiJ	ENSMSPG00010036454	lncRNA gene	Chr3:105305707-105307109 (+)
WSB/EiJ	ENSIUOG00005004772	lncRNA gene	Chr3:105519689-105521092 (+)

Homology

• Gene Tree
  Gm56809
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000120945 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120945	Ensembl Gene Model | MGI Sequence Detail	1801	C57BL/6J
transcript	ENSMUST00000246605	Ensembl | MGI Sequence Detail	1801	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56809:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr31251	Chr3:108351590-108351613 (+)	36 bp