Gm56807 Gene Detail

Summary

• Symbol
  Gm56807
• Name
  predicted gene, 56807

• Feature Type
  lncRNA gene
• IDs
  MGI:7337527
• Alliance
  genome feature page
• Transcription Start Sites
  5 TSS

Location &
Maps

• Sequence Map
  Chr3:57213108-57302013 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  2087 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337527	lncRNA gene	Chr3:57213108-57302013 (-)
129S1/SvImJ	ENSMUSG00200023582	lncRNA gene	Chr3:54084099-54166051 (-)
A/J	ENSMUSG00195033724	lncRNA gene	Chr3:54005617-54071549 (-)
AKR/J	ENSMUSG00220030153	lncRNA gene	Chr3:54053907-54135882 (-)
BALB/cJ	ENSMUSG00180026655	lncRNA gene	Chr3:54082465-54164423 (-)
C3H/HeJ	ENSMUSG00175008972	lncRNA gene	Chr3:53923932-54005891 (-)
C57BL/6NJ	ENSMUSG00215010478	lncRNA gene	Chr3:54366027-54447975 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005002474	lncRNA gene	Chr3:53679454-53767006 (-)
CBA/J	ENSMUSG00210004037	lncRNA gene	Chr3:54039618-54121577 (-)
DBA/2J	ENSMUSG00185028794	lncRNA gene	Chr3:54217384-54283286 (-)
FVB/NJ	ENSMUSG00205003688	lncRNA gene	Chr3:53194870-53265253 (-)
JF1/MsJ	ENSUMUG00000004154	lncRNA gene	Chr3:53606635-53687689 (-)
LP/J	ENSMUSG00230004856	lncRNA gene	Chr3:56220896-56302853 (-)
NOD/ShiLtJ	ENSMUSG00190034008	lncRNA gene	Chr3:54398751-54480713 (-)
NZO/HlLtJ	ENSMUSG00225018985	lncRNA gene	Chr3:58833311-58915277 (-)
PWK/PhJ	ENSLUMG00010005431	lncRNA gene	Chr3:53731402-53797132 (-)
SPRET/EiJ	ENSMSPG00010007786	lncRNA gene	Chr3:54566918-54646831 (-)
WSB/EiJ	ENSIUOG00005009043	lncRNA gene	Chr3:54182412-54252745 (-)

Homology

• Gene Tree
  Gm56807
  

Sequences &
Gene Models

• All Sequences
  64

• Ensembl
  ENSMUSG00000119987 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000119987	Ensembl Gene Model | MGI Sequence Detail	88906	C57BL/6J
transcript	ENSMUST00000257704	Ensembl | MGI Sequence Detail	2018	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56807:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr33323	Chr3:57295192-57295209 (-)	6,812 bp
Tssr33322	Chr3:57295160-57295171 (-)	6,847 bp
Tssr33321	Chr3:57295132-57295155 (-)	6,869 bp
Tssr33320	Chr3:57248388-57248392 (-)	53,623 bp
Tssr883	Chr3:57219865-57219867 (-)	82,147 bp