Gm56804 Gene Detail

Summary

• Symbol
  Gm56804
• Name
  predicted gene, 56804

• Feature Type
  lncRNA gene
• IDs
  MGI:7337521
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr3:98286543-98289756 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  217 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337521	lncRNA gene	Chr3:98286543-98289756 (-)
129S1/SvImJ	ENSMUSG00200046593	lncRNA gene	Chr3:94918131-94921314 (-)
A/J	ENSMUSG00195050142	lncRNA gene	Chr3:95316997-95320180 (-)
AKR/J	ENSMUSG00220044586	lncRNA gene	Chr3:93669098-93672281 (-)
BALB/cJ	ENSMUSG00180045322	lncRNA gene	Chr3:95259373-95262556 (-)
C3H/HeJ	ENSMUSG00175034834	lncRNA gene	Chr3:94875278-94878461 (-)
C57BL/6NJ	ENSMUSG00215039409	lncRNA gene	Chr3:95645300-95648483 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005021955	lncRNA gene	Chr3:95575407-95578524 (-)
CBA/J	ENSMUSG00210051839	lncRNA gene	Chr3:95428236-95431419 (-)
DBA/2J	ENSMUSG00185047585	lncRNA gene	Chr3:95881406-95884592 (-)
FVB/NJ	ENSMUSG00205030704	lncRNA gene	Chr3:94544389-94547572 (-)
JF1/MsJ	ENSUMUG00000053004	lncRNA gene	Chr3:94788659-94791775 (-)
LP/J	ENSMUSG00230046877	lncRNA gene	Chr3:97846656-97849839 (-)
NOD/ShiLtJ	ENSMUSG00190050792	lncRNA gene	Chr3:96056080-96059262 (-)
NZO/HlLtJ	ENSMUSG00225012895	lncRNA gene	Chr3:100314910-100318092 (-)
PWK/PhJ	ENSLUMG00010033477	lncRNA gene	Chr3:94785974-94789090 (-)
SPRET/EiJ	ENSMSPG00010047800	lncRNA gene	Chr3:95063935-95067120 (-)
WSB/EiJ	ENSIUOG00005033938	lncRNA gene	Chr3:95450183-95453366 (-)

Homology

• Gene Tree
  Gm56804
  

Sequences &
Gene Models

• All Sequences
  34

• Ensembl
  ENSMUSG00000120153 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120153	Ensembl Gene Model | MGI Sequence Detail	3214	C57BL/6J
transcript	ENSMUST00000243827	Ensembl | MGI Sequence Detail	3184	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56804:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr34699	Chr3:98289695-98289737 (-)	40 bp