Gm56803 Gene Detail

Summary

• Symbol
  Gm56803
• Name
  predicted gene, 56803

• Feature Type
  lncRNA gene
• IDs
  MGI:7337519
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr3:9673823-9674043 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  92 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337519	lncRNA gene	Chr3:9673823-9674043 (+)
129S1/SvImJ	ENSMUSG00200000745	lncRNA gene	Chr3:6346569-6346784 (+)
A/J	ENSMUSG00195001258	lncRNA gene	Chr3:6681370-6681585 (+)
AKR/J	ENSMUSG00220017126	lncRNA gene	Chr3:6692388-6692603 (+)
BALB/cJ	ENSMUSG00180007321	lncRNA gene	Chr3:6703698-6703913 (+)
C3H/HeJ	ENSMUSG00175005062	lncRNA gene	Chr3:6689727-6689942 (+)
C57BL/6NJ	ENSMUSG00215005627	lncRNA gene	Chr3:6703245-6703460 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005000297	lncRNA gene	Chr3:6762066-6762281 (+)
CBA/J	ENSMUSG00210000680	lncRNA gene	Chr3:6675033-6675248 (+)
DBA/2J	ENSMUSG00185000537	lncRNA gene	Chr3:6677325-6677540 (+)
FVB/NJ	ENSMUSG00205006024	lncRNA gene	Chr3:6506858-6507073 (+)
JF1/MsJ	ENSUMUG00000010911	lncRNA gene	Chr3:6558267-6558479 (+)
LP/J	ENSMUSG00230000238	lncRNA gene	Chr3:8598503-8598718 (+)
NOD/ShiLtJ	ENSMUSG00190023178	lncRNA gene	Chr3:6782585-6782800 (+)
NZO/HlLtJ	ENSMUSG00225000992	lncRNA gene	Chr3:11165894-11166109 (+)
PWK/PhJ	ENSLUMG00010008460	lncRNA gene	Chr3:6616281-6616492 (+)
SPRET/EiJ	ENSMSPG00010000166	lncRNA gene	Chr3:6503618-6503830 (+)
WSB/EiJ	ENSIUOG00005000784	lncRNA gene	Chr3:6689524-6689739 (+)

Homology

• Gene Tree
  Gm56803
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000120589 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120589	Ensembl Gene Model | MGI Sequence Detail	221	C57BL/6J
transcript	ENSMUST00000244382	Ensembl | MGI Sequence Detail	221	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56803:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr28346	Chr3:9673863-9673884 (+)	51 bp
Tssr28347	Chr3:9673886-9673901 (+)	71 bp