Gm56802 Gene Detail

Summary

• Symbol
  Gm56802
• Name
  predicted gene, 56802

• Feature Type
  lncRNA gene
• IDs
  MGI:7337517
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr3:28314659-28319394 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  206 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337517	lncRNA gene	Chr3:28314659-28319394 (-)
129S1/SvImJ	ENSMUSG00200024721	lncRNA gene	Chr3:25037121-25038413 (-)
A/J	ENSMUSG00195022148	lncRNA gene	Chr3:25156131-25157439 (-)
AKR/J	ENSMUSG00220008775	lncRNA gene	Chr3:25164133-25165425 (-)
BALB/cJ	ENSMUSG00180035050	lncRNA gene	Chr3:25154825-25156117 (-)
C3H/HeJ	ENSMUSG00175028873	lncRNA gene	Chr3:25147087-25148394 (-)
C57BL/6NJ	ENSMUSG00215018797	lncRNA gene	Chr3:25413867-25415158 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005025979	lncRNA gene	Chr3:25003660-25004976 (-)
CBA/J	ENSMUSG00210037766	lncRNA gene	Chr3:25132929-25134232 (-)
DBA/2J	ENSMUSG00185009739	lncRNA gene	Chr3:25378933-25380243 (-)
FVB/NJ	ENSMUSG00205009183	lncRNA gene	Chr3:24700889-24702200 (-)
JF1/MsJ	ENSUMUG00000005427	lncRNA gene	Chr3:24864246-24865552 (-)
LP/J	ENSMUSG00230002299	lncRNA gene	Chr3:27266596-27267887 (-)
NOD/ShiLtJ	ENSMUSG00190036389	lncRNA gene	Chr3:25437569-25438879 (-)
NZO/HlLtJ	ENSMUSG00225007494	lncRNA gene	Chr3:29901125-29902416 (-)
PWK/PhJ	ENSLUMG00010038204	lncRNA gene	Chr3:24857061-24858333 (-)
SPRET/EiJ	ENSMSPG00010024576	lncRNA gene	Chr3:25244734-25246000 (-)
WSB/EiJ	ENSIUOG00005036232	lncRNA gene	Chr3:25414607-25415895 (-)

Homology

• Gene Tree
  Gm56802
  

Sequences &
Gene Models

• All Sequences
  31

• Ensembl
  ENSMUSG00000120615 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120615	Ensembl Gene Model | MGI Sequence Detail	4736	C57BL/6J
transcript	ENSMUST00000244612	Ensembl | MGI Sequence Detail	3862	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56802:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr32866	Chr3:28319379-28319396 (-)	6 bp
Tssr32865	Chr3:28318384-28318398 (-)	1,003 bp