Gm56801 Gene Detail

Summary

• Symbol
  Gm56801
• Name
  predicted gene, 56801

• Feature Type
  lncRNA gene
• IDs
  MGI:7337515
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr3:108107208-108108566 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  82 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337515	lncRNA gene	Chr3:108107208-108108566 (+)
129S1/SvImJ	ENSMUSG00200035886	lncRNA gene	Chr3:104723899-104724536 (+)
A/J	ENSMUSG00195026386	lncRNA gene	Chr3:105150351-105150988 (+)
AKR/J	ENSMUSG00220033529	lncRNA gene	Chr3:103513980-103514617 (+)
BALB/cJ	ENSMUSG00180020414	lncRNA gene	Chr3:105095684-105096321 (+)
C3H/HeJ	ENSMUSG00175031839	lncRNA gene	Chr3:104630451-104631088 (+)
C57BL/6NJ	ENSMUSG00215032878	lncRNA gene	Chr3:105358324-105358961 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005026995	lncRNA gene	Chr3:105637016-105637653 (+)
CBA/J	ENSMUSG00210008626	lncRNA gene	Chr3:105252311-105252948 (+)
DBA/2J	ENSMUSG00185023054	lncRNA gene	Chr3:105721651-105722288 (+)
FVB/NJ	ENSMUSG00205030312	lncRNA gene	Chr3:104288321-104288958 (+)
JF1/MsJ	ENSUMUG00000005564	lncRNA gene	Chr3:104697098-104697735 (+)
LP/J	ENSMUSG00230021447	lncRNA gene	Chr3:107636898-107637535 (+)
NOD/ShiLtJ	ENSMUSG00190041011	lncRNA gene	Chr3:105959743-105960380 (+)
NZO/HlLtJ	ENSMUSG00225020658	lncRNA gene	Chr3:110142843-110143480 (+)
PWK/PhJ	ENSLUMG00010024825	lncRNA gene	Chr3:104560467-104561104 (+)
SPRET/EiJ	ENSMSPG00010035342	lncRNA gene	Chr3:105061513-105062153 (+)
WSB/EiJ	ENSIUOG00005004819	lncRNA gene	Chr3:105274211-105274848 (+)

Homology

• Gene Tree
  Gm56801
  

Sequences &
Gene Models

• All Sequences
  24

• Ensembl
  ENSMUSG00000120830 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120830	Ensembl Gene Model | MGI Sequence Detail	1359	C57BL/6J
transcript	ENSMUST00000377889	Ensembl | MGI Sequence Detail	1013	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56801:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr1019	Chr3:108107232-108107242 (+)	29 bp
Tssr31237	Chr3:108107915-108107945 (+)	722 bp