Gm56798 Gene Detail

Summary

• Symbol
  Gm56798
• Name
  predicted gene, 56798

• Feature Type
  lncRNA gene
• IDs
  MGI:7337509
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr3:117662666-117690864 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  838 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337509	lncRNA gene	Chr3:117662666-117690864 (+)
129S1/SvImJ	ENSMUSG00200027660	lncRNA gene	Chr3:114357709-114358076 (+)
A/J	ENSMUSG00195017109	lncRNA gene	Chr3:114584571-114584938 (+)
AKR/J	ENSMUSG00220027264	lncRNA gene	Chr3:112986486-112986853 (+)
BALB/cJ	ENSMUSG00180031989	lncRNA gene	Chr3:114528514-114528881 (+)
C3H/HeJ	ENSMUSG00175028550	lncRNA gene	Chr3:114069296-114069663 (+)
C57BL/6NJ	ENSMUSG00215007967	lncRNA gene	Chr3:114789657-114790024 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005034181	lncRNA gene	Chr3:115062388-115062757 (+)
CBA/J	ENSMUSG00210003170	lncRNA gene	Chr3:114692322-114692689 (+)
DBA/2J	ENSMUSG00185008050	lncRNA gene	Chr3:115271979-115272346 (+)
FVB/NJ	ENSMUSG00205007911	lncRNA gene	Chr3:113620344-113620711 (+)
JF1/MsJ	ENSUMUG00000004051	lncRNA gene	Chr3:114168770-114169140 (+)
LP/J	ENSMUSG00230012233	lncRNA gene	Chr3:117206180-117206547 (+)
NOD/ShiLtJ	ENSMUSG00190037678	lncRNA gene	Chr3:115668778-115669145 (+)
NZO/HlLtJ	ENSMUSG00225003857	lncRNA gene	Chr3:119701484-119701851 (+)
PWK/PhJ	ENSLUMG00010010020	lncRNA gene	Chr3:114040181-114040551 (+)
SPRET/EiJ	ENSMSPG00010032156	lncRNA gene	Chr3:114686055-114686424 (+)
WSB/EiJ	ENSIUOG00005007412	lncRNA gene	Chr3:114852985-114853352 (+)

Homology

• Gene Tree
  Gm56798
  

Sequences &
Gene Models

• All Sequences
  22

• Ensembl
  ENSMUSG00000120861 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120861	Ensembl Gene Model | MGI Sequence Detail	28199	C57BL/6J
transcript	ENSMUST00000294733	Ensembl | MGI Sequence Detail	457	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56798:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr31404	Chr3:117662669-117662698 (+)	18 bp