Gm56797 Gene Detail

Summary

• Symbol
  Gm56797
• Name
  predicted gene, 56797

• Feature Type
  lncRNA gene
• IDs
  MGI:7337507
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr3:32451214-32451344 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  62 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7337507	lncRNA gene	Chr3:32451214-32451344 (+)
129S1/SvImJ	ENSMUSG00200024858	lncRNA gene	Chr3:29185880-29185975 (+)
A/J	ENSMUSG00195022096	lncRNA gene	Chr3:29176478-29176573 (+)
AKR/J	ENSMUSG00220008761	lncRNA gene	Chr3:29217659-29217754 (+)
BALB/cJ	ENSMUSG00180033633	lncRNA gene	Chr3:29301808-29301903 (+)
C3H/HeJ	ENSMUSG00175029131	lncRNA gene	Chr3:29169327-29169422 (+)
C57BL/6NJ	ENSMUSG00215020214	lncRNA gene	Chr3:29575856-29575951 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005026454	lncRNA gene	Chr3:29069906-29070001 (+)
CBA/J	ENSMUSG00210038266	lncRNA gene	Chr3:29255321-29255416 (+)
DBA/2J	ENSMUSG00185009653	lncRNA gene	Chr3:29512515-29512610 (+)
FVB/NJ	ENSMUSG00205009176	lncRNA gene	Chr3:28698259-28698354 (+)
JF1/MsJ	ENSUMUG00000005660	lncRNA gene	Chr3:28950180-28950275 (+)
LP/J	ENSMUSG00230024758	lncRNA gene	Chr3:31432397-31432492 (+)
NOD/ShiLtJ	ENSMUSG00190037352	lncRNA gene	Chr3:29500404-29500499 (+)
NZO/HlLtJ	ENSMUSG00225007463	lncRNA gene	Chr3:34050395-34050490 (+)
PWK/PhJ	ENSLUMG00010037368	lncRNA gene	Chr3:28993903-28993998 (+)
SPRET/EiJ	ENSMSPG00010025431	lncRNA gene	Chr3:29327067-29327162 (+)
WSB/EiJ	ENSIUOG00005036524	lncRNA gene	Chr3:29501186-29501281 (+)

Homology

• Gene Tree
  Gm56797
  

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000120857 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000120857	Ensembl Gene Model | MGI Sequence Detail	131	C57BL/6J
transcript	ENSMUST00000246137	Ensembl | MGI Sequence Detail	131	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm56797:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr28747	Chr3:32451256-32451293 (+)	61 bp
Tssr28748	Chr3:32451299-32451328 (+)	100 bp